TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349460.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    40   2e-04
gb|GL349461.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    27   2.0  
gb|GL349490.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   7.8  

>gb|GL349460.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold
            supercont1.28, whole genome shotgun sequence
          Length = 422706

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 22/41 (53%), Positives = 24/41 (58%)
 Frame = +2

Query: 1    MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTL 41
            M YI NGQV ++ SQ   RLSLI D FWGI  F      TL
Sbjct: 9305 MTYIRNGQV-ETGSQPLLRLSLIPDLFWGIVNFAYFLVATL 9424


>gb|GL349461.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.29,
              whole genome shotgun sequence
          Length = 406166

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 4      ISNGQVLDSRSQSPWRLS 21
              + NG++L SRS+ PW +S
Sbjct: 152304 VQNGRLLTSRSEEPWSIS 152251


>gb|GL349490.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.58,
             whole genome shotgun sequence
          Length = 226779

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 13    RSQSPWRLSLITDFFWGIAEFVVL 36
             RS+ PW LSL+  F  G+A +  L
Sbjct: 30823 RSRRPWSLSLLAPFDLGLAGWAQL 30894


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,971,376
Number of Sequences: 131
Number of extensions: 14686
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 7
length of query: 94
length of database: 9,560,209
effective HSP length: 69
effective length of query: 25
effective length of database: 9,551,170
effective search space: 238779250
effective search space used: 238779250
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)