TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349446.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   1.2  
gb|GL349452.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    27   2.1  
gb|GL349484.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    27   2.8  
gb|GL349477.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   3.6  
gb|GL349434.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   3.6  
gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   4.7  
gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   4.7  
gb|GL349441.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   6.2  
gb|GL349495.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   8.1  
gb|GL349491.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   8.1  
gb|GL349488.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   8.1  
gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   8.1  

>gb|GL349446.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.14,
              whole genome shotgun sequence
          Length = 557936

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 3      YIDHNGRVWEKRPWDWRRIVELFVGIW 29
              ++ H GR W  R W WR  VE +   W
Sbjct: 496155 HLAHGGRGWWWRGWWWRGWVECWCWCW 496235


>gb|GL349452.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.20,
              whole genome shotgun sequence
          Length = 525314

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 4      IDHNGRVWEKRPWDWRRIVELFVGIW 29
              I   G  W K PWDWR  +  FVG W
Sbjct: 416849 ISFPGPTWTK-PWDWRGYL-FFVGNW 416920


>gb|GL349484.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.52,
              whole genome shotgun sequence
          Length = 300266

 Score = 26.6 bits (57), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 87     RPNRRIGRIQPTMSCNMPAGG 107
              RP RR   +QP ++C  P GG
Sbjct: 229553 RPPRRARLLQPALACPSPGGG 229491


>gb|GL349477.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.45,
              whole genome shotgun sequence
          Length = 310545

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 24     LFVGIWFAIKQLFLTFLAP 42
              +F+G+ F +  LF+TF+AP
Sbjct: 265728 MFLGVAFGLSLLFITFVAP 265784


>gb|GL349434.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.2,
              whole genome shotgun sequence
          Length = 680870

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 7      NGRVWEKRPWDWRR 20
              N RVW+KR W W++
Sbjct: 115817 NVRVWDKRTWAWQQ 115858


>gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.57,
              whole genome shotgun sequence
          Length = 255174

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 4      IDHNGRVWEKRPWDWR 19
              +D +GR W +  WDWR
Sbjct: 255085 LD*DGRRWGRMAWDWR 255132


>gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.3,
              whole genome shotgun sequence
          Length = 673526

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 86     LRPNRRIGRIQPTMSCNMPAGGGUG 110
              +RP RR G ++P+ +     GGG G
Sbjct: 306418 VRPRRRPGAVRPSAASTRGRGGGGG 306344


>gb|GL349441.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.9,
              whole genome shotgun sequence
          Length = 584593

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 87     RPNRRIGRIQPTMSCNMP 104
              RP RR  R +PT SC +P
Sbjct: 339654 RPGRRSPRRRPTRSCTLP 339707


>gb|GL349495.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.63,
              whole genome shotgun sequence
          Length = 205260

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 12     EKRPWDWRRIVEL 24
              EKR WDWR I  L
Sbjct: 167295 EKREWDWRLIAHL 167257


>gb|GL349491.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.59,
              whole genome shotgun sequence
          Length = 227305

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 9      RVWEKRPWDWRRIVELFVGIW 29
              + WE R W W R   + +G W
Sbjct: 174655 QAWESRRWRWCRRSRMMLGGW 174593


>gb|GL349488.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.56,
              whole genome shotgun sequence
          Length = 238995

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 2      VYIDHNGRVWEKRPWDWRRIVELFV 26
              V+ +   R+W KR  DWR +++L V
Sbjct: 189636 VWAELGVRLWGKRRGDWRDLLQLCV 189562


>gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.7,
              whole genome shotgun sequence
          Length = 618594

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 4      IDHNGRVWEKRPWD-WRRIVELFVGIW 29
              +DH  R+W +R W  W ++V L VG+W
Sbjct: 567356 LDHF-RLWRRRLWPRWSKLVRL-VGLW 567282


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.328    0.144    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,315,140
Number of Sequences: 131
Number of extensions: 52204
Number of successful extensions: 897
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 132
length of query: 110
length of database: 9,560,209
effective HSP length: 84
effective length of query: 26
effective length of database: 9,549,205
effective search space: 248279330
effective search space used: 248279330
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)