TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Homo sapiens # Complete
         (392 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   289   3e-78
gb|GL349490.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    32   0.97 
gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    31   1.6  
gb|GL349466.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    29   6.3  
gb|GL349456.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   8.2  

>gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.3,
              whole genome shotgun sequence
          Length = 673526

 Score =  289 bits (739), Expect = 3e-78
 Identities = 157/313 (50%), Positives = 206/313 (65%), Gaps = 8/313 (2%)
 Frame = -3

Query: 66     IGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML 125
              IG+D  +IP    G+  +QTTDY YP+V+DPY  GRIACANVLSDL+AMG++ CD MLM+
Sbjct: 663822 IGLDCSIIPTAIEGVVTIQTTDYFYPLVEDPYQQGRIACANVLSDLFAMGISRCDTMLMI 663643

Query: 126    LGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVC-QPNE 184
              L  S +M   +R  V   +I+GF D A EAGTSVTGGQTVLNPW ++GGVA+ V      
Sbjct: 663642 LAASLEMPKDQRMIVTRELIRGFNDLATEAGTSVTGGQTVLNPWPIIGGVASAVVPSDGG 663463

Query: 185    FIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPE------KWNKIKLVVTQEDVELAYQ 238
              +I P + VPGDV+VLTKP+GTQVAV  +QWL   E       W+ I  V++     +A+ 
Sbjct: 663462 YIDPFSLVPGDVMVLTKPIGTQVAVNAYQWLGDHEAGKEGSNWDLIADVLSPAQARVAFA 663283

Query: 239    EAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAK 298
               A  +MARLN++ A LM    AH ATD+TGFG+LGHA+NLA+ Q+  V   IH LPV+  
Sbjct: 663282 LASASMARLNKSGAALMVKHGAHGATDVTGFGLLGHARNLAEHQKAAVHISIHTLPVIEN 663103

Query: 299    MAAVSKACGNMFGLMHGTCPETSGGLLICLP-REQAARFCAEIKSPKYGEGHQAWIIGIV 357
              M AV+      F L+ G   ETSGGLL+ LP  + AA FCA+I++    +G  AWI+G V
Sbjct: 663102 MPAVNDKFN--FKLLDGWSSETSGGLLVALPSADAAAAFCADIEAE---DGWPAWIVGSV 662938

Query: 358    EKGNRTARIIDKP 370
                G+ +A I++ P
Sbjct: 662937 SAGSGSADIVENP 662899



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 22/39 (56%), Positives = 26/39 (66%)
 Frame = -1

Query: 6      SFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLES 44
              SF+P S  L   FRLT + +LKG GCKV Q+ L  LLES
Sbjct: 664289 SFDPTSLGLPPGFRLTDYAKLKG*GCKVSQEDLHGLLES 664173


>gb|GL349490.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.58,
              whole genome shotgun sequence
          Length = 226779

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -2

Query: 289    VIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEG 348
              V+H LP+ A  +AVS        +   + P T+   L+ LP  Q  R    ++  ++  G
Sbjct: 126920 VVHRLPIAAAASAVSPTTRRAAAVPAASIPTTATTRLLLLPPRQLRRAVVPVRQVRHAPG 126741

Query: 349    HQ 350
               +
Sbjct: 126740 RR 126735


>gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold
            supercont1.54, whole genome shotgun sequence
          Length = 279941

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 315  GTCPETSGGLLICLPREQAARFCAEIKSPKYG--EGHQAWIIGIVEKGNR 362
            GT     GG+ +CL R   A      ++P YG   G + W++G V  G R
Sbjct: 7369 GT*KGKEGGVCVCLWRAGVAPHRVPCRTPWYGIARGVRIWVVGEVRGGGR 7220


>gb|GL349466.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.34,
              whole genome shotgun sequence
          Length = 390530

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 316    TCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWII 354
              +CP  S GL +C+PR+ A R C+       G   Q W++
Sbjct: 313331 SCPARSCGL-VCVPRQDALRVCS-------GLAQQRWLV 313423


>gb|GL349456.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.24,
              whole genome shotgun sequence
          Length = 453307

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -3

Query: 323    GLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRI 372
              GLL CLPR Q  R C  +  P  G G Q             AR+ID+ R+
Sbjct: 345509 GLLYCLPRRQPRRRCRRLGRP--GPGLQR---------RTLARLIDRRRL 345393


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,413,380
Number of Sequences: 131
Number of extensions: 240111
Number of successful extensions: 1046
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 167
length of query: 392
length of database: 9,560,209
effective HSP length: 101
effective length of query: 291
effective length of database: 9,546,978
effective search space: 2778170598
effective search space used: 2778170598
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)