TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   205   3e-53
gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   9.9  

>gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.3,
              whole genome shotgun sequence
          Length = 673526

 Score =  205 bits (522), Expect = 3e-53
 Identities = 132/309 (42%), Positives = 189/309 (61%), Gaps = 8/309 (2%)
 Frame = -3

Query: 55     GMDCAVIPLKRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMI 114
              G+DC++IP    +  + IQT D+FYP+V DP   GRIA ANVLSD++A+G+++ DT+ MI
Sbjct: 663819 GLDCSIIPTAI-EGVVTIQTTDYFYPLVEDPYQQGRIACANVLSDLFAMGISRCDTMLMI 663643

Query: 115    VSTSTSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRS 174
              ++ S    + +R +V   +++GF +     G   T +   Q  +NPW IIGG+A++V  S
Sbjct: 663642 LAASLEMPKDQRMIVTRELIRGFNDLATEAG---TSVTGGQTVLNPWPIIGGVASAVVPS 663472

Query: 175    EE-IILPSNAQPGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKK------LLSECSDADIK 227
              +   I P +  PGDV+VLTKP+G Q+A++A+ W L   E  K+      +    S A  +
Sbjct: 663471 DGGYIDPFSLVPGDVMVLTKPIGTQVAVNAYQW-LGDHEAGKEGSNWDLIADVLSPAQAR 663295

Query: 228    ETFEIAVKSMTYLNKNAALLMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQINKLP 287
                F +A  SM  LNK+ A LM K+ AH ATD+TGFGLLGHA NLA+ QK  V   I+ LP
Sbjct: 663294 VAFALASASMARLNKSGAALMVKHGAHGATDVTGFGLLGHARNLAEHQKAAVHISIHTLP 663115

Query: 288    IIKNVLKFSTLVGQSTKFRSGRSVETSGGLLICLP-ADAADKFCRDFEEATNGEQKSFQI 346
              +I+N+   +     + K   G S ETSGGLL+ LP ADAA  FC D  EA +G   ++ +
Sbjct: 663114 VIENMPAVNDKF--NFKLLDGWSSETSGGLLVALPSADAAAAFCADI-EAEDG-WPAWIV 662947

Query: 347    GHVTAANES 355
              G V+A + S
Sbjct: 662946 GSVSAGSGS 662920



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 2      FQPEKHGLEPDFQLTKFTTHTGUSCKIPQKVLEKYLRGTEI 42
              F P   GL P F+LT +    G  CK+ Q+ L   L  T +
Sbjct: 664286 FDPTSLGLPPGFRLTDYAKLKG*GCKVSQEDLHGLLESTPL 664164


>gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.18,
             whole genome shotgun sequence
          Length = 527020

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 85    PELLG-RIALANVLSDVYAVGVTQFD 109
             PELLG  + +  + SD+YA+G+T F+
Sbjct: 31617 PELLGSEVPVPTMASDIYALGITLFE 31540


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,585,699
Number of Sequences: 131
Number of extensions: 142990
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 39
length of query: 370
length of database: 9,560,209
effective HSP length: 101
effective length of query: 269
effective length of database: 9,546,978
effective search space: 2568137082
effective search space used: 2568137082
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)