TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000047_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Drosophila melanogaster # Complete
         (398 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   324   7e-89
gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    29   4.9  
gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   8.3  

>gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.3,
              whole genome shotgun sequence
          Length = 673526

 Score =  324 bits (830), Expect = 7e-89
 Identities = 172/316 (54%), Positives = 218/316 (68%), Gaps = 8/316 (2%)
 Frame = -3

Query: 82     AIPRIGIGLDCSVIPLRHGGLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDC 141
              AI    IGLDCS+IP    G+  +QTTD+FYP+V+DPY  G+IACANVLSDL+AMG++ C
Sbjct: 663840 AIDNEAIGLDCSIIPTAIEGVVTIQTTDYFYPLVEDPYQQGRIACANVLSDLFAMGISRC 663661

Query: 142    DNMLMLLAVSTKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVASTI 201
              D MLM+LA S +M + +R +V   ++RGF D A EAGT+VTGGQ+V+NPW  IGGVAS +
Sbjct: 663660 DTMLMILAASLEMPKDQRMIVTRELIRGFNDLATEAGTSVTGGQTVLNPWPIIGGVASAV 663481

Query: 202    C-QPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWIDQPE------RWNRIKLVVSEED 254
                    YI P + V GDV+VLTKP+GTQVAVNA+QW+   E       W+ I  V+S   
Sbjct: 663480 VPSDGGYIDPFSLVPGDVMVLTKPIGTQVAVNAYQWLGDHEAGKEGSNWDLIADVLSPAQ 663301

Query: 255    VRKAYHRAMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHN 314
               R A+  A  SMARLN+  A LM K+ AHGATD+TGFGLLGHA+ LA HQK  V   IH 
Sbjct: 663300 ARVAFALASASMARLNKSGAALMVKHGAHGATDVTGFGLLGHARNLAEHQKAAVHISIHT 663121

Query: 315    LPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLP-REQAAAYCKDIEKQEGYQAWII 373
              LPVI  M AV       F+LL G S+ETSGGLL+ LP  + AAA+C DIE ++G+ AWI+
Sbjct: 663120 LPVIENMPAVNDKFN--FKLLDGWSSETSGGLLVALPSADAAAAFCADIEAEDGWPAWIV 662947

Query: 374    GIVEKGNKTARIIDKP 389
              G V  G+ +A I++ P
Sbjct: 662946 GSVSAGSGSADIVENP 662899



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = -1

Query: 27     FDPTAHDLDASFRLTRFADLKGRGCKVPQDVLSKLVSA 64
              FDPT+  L   FRLT +A LKG GCKV Q+ L  L+ +
Sbjct: 664286 FDPTSLGLPPGFRLTDYAKLKG*GCKVSQEDLHGLLES 664173


>gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.7,
              whole genome shotgun sequence
          Length = 618594

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 27/96 (28%), Positives = 41/96 (42%)
 Frame = +1

Query: 86     IGIGLDCSVIPLRHGGLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNML 145
              IG+G++   +        L  T  F+ PI  D  + G I  A   S L  +       ++
Sbjct: 191044 IGLGINLESLFPAVSYRVLAATFVFYVPIYRDICLWGGIVDAARYSALRVLRSGKSVALV 191223

Query: 146    MLLAVSTKMTEKERDVVIPLIMRGFKDSALEAGTTV 181
                 A     T+ +RDVV+    RGF   ALE G ++
Sbjct: 191224 PGGATEALHTDPDRDVVVLRKRRGFIKLALEHGASL 191331


>gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.55,
             whole genome shotgun sequence
          Length = 273410

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 297   AQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSG-GLLICLPREQA 355
             A+TLA+ +    S    +    A +AA A  C     L   HSA  S   LL+C+P E A
Sbjct: 90683 ARTLASLRSTGGSASAASCGTSAFIAANASRCSESRSLSGSHSAALSATALLVCVPTESA 90504


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,782,647
Number of Sequences: 131
Number of extensions: 239959
Number of successful extensions: 1076
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 195
length of query: 398
length of database: 9,560,209
effective HSP length: 102
effective length of query: 296
effective length of database: 9,546,847
effective search space: 2825866712
effective search space used: 2825866712
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)