TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000055_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Anopheles gambiae # Complete
         (396 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...   313   2e-85
gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    30   3.7  
gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    29   4.8  
gb|GL349445.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   8.3  

>gb|GL349435.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.3,
              whole genome shotgun sequence
          Length = 673526

 Score =  313 bits (801), Expect = 2e-85
 Identities = 168/310 (54%), Positives = 212/310 (68%), Gaps = 8/310 (2%)
 Frame = -3

Query: 86     IGLDCSVIPLRHGGLCMVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTEVDNMLML 145
              IGLDCS+IP    G+  +QTTD+FYP+V+DPY  G+IACANVLSDL+AMG++  D MLM+
Sbjct: 663822 IGLDCSIIPTAIEGVVTIQTTDYFYPLVEDPYQQGRIACANVLSDLFAMGISRCDTMLMI 663643

Query: 146    LAVSTKMIEKERDVVIPLIMRGFKDSALEAGTSVTGGHSVVNPWCTIGGVATTIC-QQNE 204
              LA S +M + +R +V   ++RGF D A EAGTSVTGG +V+NPW  IGGVA+ +      
Sbjct: 663642 LAASLEMPKDQRMIVTRELIRGFNDLATEAGTSVTGGQTVLNPWPIIGGVASAVVPSDGG 663463

Query: 205    FIVPDNAVVGDVLVLTKALGTQVAVNAHQWLDQSE------RWNRIKLVVSEEDVRKAYH 258
              +I P + V GDV+VLTK +GTQVAVNA+QWL   E       W+ I  V+S    R A+ 
Sbjct: 663462 YIDPFSLVPGDVMVLTKPIGTQVAVNAYQWLGDHEAGKEGSNWDLIADVLSPAQARVAFA 663283

Query: 259    RAMDSMSRLNRVAARLMHKYNAHGATDVTGFGLLGHAQTLASHQKNEVSFVIHNLPVIAK 318
               A  SM+RLN+  A LM K+ AHGATDVTGFGLLGHA+ LA HQK  V   IH LPVI  
Sbjct: 663282 LASASMARLNKSGAALMVKHGAHGATDVTGFGLLGHARNLAEHQKAAVHISIHTLPVIEN 663103

Query: 319    MAAVAKACGNMFQLLQGHSAETSGGLLICLP-REQAAAYCKDIEKQEGCQAWIIGIVEKG 377
              M AV       F+LL G S+ETSGGLL+ LP  + AAA+C DIE ++G  AWI+G V  G
Sbjct: 663102 MPAVNDKFN--FKLLDGWSSETSGGLLVALPSADAAAAFCADIEAEDGWPAWIVGSVSAG 662929

Query: 378    SRTARIIDKP 387
              S +A I++ P
Sbjct: 662928 SGSADIVENP 662899



 Score = 38.1 bits (87), Expect = 0.010
 Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -1

Query: 4      YQQDPMVHLELTGNTGMVLRR------PFDPTAHDLDASFRLTRFADLKGRCCKVPKEVL 57
              Y   PM   + TG     L         FDPT+  L   FRLT +A LKG  CKV +E L
Sbjct: 664370 YSLGPMSSTQYTGVVSARLSANNEETGSFDPTSLGLPPGFRLTDYAKLKG*GCKVSQEDL 664191

Query: 58     EKLVSS 63
                L+ S
Sbjct: 664190 HGLLES 664173


>gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.55,
             whole genome shotgun sequence
          Length = 273410

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 295   AQTLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSG-GLLICLPREQA 353
             A+TLAS +    S    +    A +AA A  C     L   HSA  S   LL+C+P E A
Sbjct: 90683 ARTLASLRSTGGSASAASCGTSAFIAANASRCSESRSLSGSHSAALSATALLVCVPTESA 90504



 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
 Frame = -2

Query: 50     CKVPKEVLEKLVSSLQQDYMQDPDQPFMPMSSPRIGIGLDCSVIPL--------RHGGLC 101
              C + + VLE L+  LQ++ ++DP + ++ +S   + +G  C V+ L        R G LC
Sbjct: 252238 CHLGRLVLECLLGLLQRNKLRDPRRKYLALS---LRLGQHCRVVVLLGTRTLHTRLGQLC 252068

Query: 102    MV 103
              ++
Sbjct: 252067 LL 252062


>gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.5,
              whole genome shotgun sequence
          Length = 654703

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 246    LVVSEEDVRKAYHRAMDSMSRLNRVAARLMHKYNAHGATDVT 287
              L V  E  RKA     DS ++L R AAR + KY+ +G   +T
Sbjct: 374329 LCVGVEPARKAAIFDTDSWTKLARRAARALPKYDVNGCPGLT 374454


>gb|GL349445.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.13,
              whole genome shotgun sequence
          Length = 561051

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 333    LQGHSAETSGGLLICLPREQAAAYCKDIEKQEGCQAW 369
              +QGH   T+     C  R QAA Y ++ E Q+  QAW
Sbjct: 267757 IQGHEQGTASRSRGCRARTQAAGYWRE-EVQQKAQAW 267650


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,679,046
Number of Sequences: 131
Number of extensions: 234362
Number of successful extensions: 1108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 130
length of query: 396
length of database: 9,560,209
effective HSP length: 102
effective length of query: 294
effective length of database: 9,546,847
effective search space: 2806773018
effective search space used: 2806773018
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)