TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743889.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    34   0.024
gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    28   1.7  
gb|GG743965.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    26   6.4  

>gb|GG743889.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.7, whole
              genome shotgun sequence
          Length = 943373

 Score = 34.3 bits (77), Expect = 0.024
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 1      MVYISNGQVLDSRSQSPW-RLSLITDFFWGIAEFVVL 36
              M YIS G+V++ RS   W RLS+  D FWG+   + L
Sbjct: 733168 MTYISGGRVVEQRS---WLRLSIFPDMFWGLLSIIQL 733067


>gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.1, whole
              genome shotgun sequence
          Length = 1615555

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 1      MVYISNGQVLDSRSQSPWRLS 21
              +V+ SNG  LD R+ S WRLS
Sbjct: 627331 LVFTSNGCALDGRAISTWRLS 627393


>gb|GG743965.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.83, whole
             genome shotgun sequence
          Length = 164188

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 1     MVYISNGQVLDSRSQSPWRLS 21
             M+YIS+G  L SR  + W LS
Sbjct: 69652 MIYISSGATLTSRCTTVWTLS 69714


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,841,058
Number of Sequences: 1445
Number of extensions: 32287
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 72
length of query: 94
length of database: 17,710,878
effective HSP length: 69
effective length of query: 25
effective length of database: 17,611,173
effective search space: 440279325
effective search space used: 440279325
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)