TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743890.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    27   3.8  
gb|GG744231.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    26   6.4  
gb|GG744033.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    26   6.4  
gb|GG743893.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    26   6.4  
gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    26   6.4  
gb|GG743906.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    26   8.4  

>gb|GG743890.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.8, whole
              genome shotgun sequence
          Length = 845095

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 3      YIDHNGRVWEKRPWDWRRI 21
              Y+D  GRV  +RPW  R++
Sbjct: 495013 YLDSGGRVQARRPWSSRKV 495069



 Score = 25.8 bits (55), Expect = 8.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 13     KRPWDWRRIVELFVGIWFAIK 33
              + PW W+ I  L   IW A+K
Sbjct: 261726 RTPWPWKEIHSLEPEIWLALK 261788


>gb|GG744231.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.349,
             whole genome shotgun sequence
          Length = 12215

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 6     HNGRVWEKRPWDWRRIVELFVGIW 29
             H+G +W +R  DWR +  L   +W
Sbjct: 11834 HSGNLWGRRGGDWRSVRVLRRRLW 11763


>gb|GG744033.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.151,
             whole genome shotgun sequence
          Length = 61090

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 5     DHNGRVWEKRPWDWRR 20
             D +G++WE+ P DW+R
Sbjct: 30595 DDDGQLWER*PLDWQR 30642


>gb|GG743893.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.11, whole
             genome shotgun sequence
          Length = 752600

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
 Frame = -3

Query: 4     IDHNGRVWEKRPWDW-RRIVELFVGI---------WFAIKQLFLTF 39
             I H GRVW +    + R++V  F  +         WF +  LFLTF
Sbjct: 76020 IGHFGRVWSQSSHSFGRKLVFTFQFVYLALQNLLSWFLLSNLFLTF 75883


>gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.5, whole
              genome shotgun sequence
          Length = 1129684

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 10     VWEKRPWDWRR 20
              +W +RPW WRR
Sbjct: 787046 MWRQRPWTWRR 787014



 Score = 26.2 bits (56), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 10     VWEKRPWDWRR 20
              +W +RPW WRR
Sbjct: 781494 MWRQRPWTWRR 781526



 Score = 26.2 bits (56), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 10     VWEKRPWDWRR 20
              +W +RPW WRR
Sbjct: 784249 MWRQRPWTWRR 784281


>gb|GG743906.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.24, whole
              genome shotgun sequence
          Length = 471063

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 4      IDHNGRVWEKRPWDWRR 20
              + H GR W   PW  RR
Sbjct: 225255 VTHRGRKWSAEPWSLRR 225205


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.328    0.144    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,060,143
Number of Sequences: 1445
Number of extensions: 71075
Number of successful extensions: 931
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 462
length of query: 110
length of database: 17,710,878
effective HSP length: 85
effective length of query: 25
effective length of database: 17,588,053
effective search space: 439701325
effective search space used: 439701325
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)