TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[translate(1)] (89 letters) Database: S.parasitica/genome.fa 1445 sequences; 53,132,636 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG743949.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 31 0.20 gb|GG743909.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 28 1.7 gb|GG743946.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 27 4.9 gb|GG743940.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 27 4.9 gb|GG743888.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 27 4.9 gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 27 4.9 gb|GG743901.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 26 6.4 gb|GG744684.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 26 8.4 gb|GG743938.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 26 8.4 gb|GG743913.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 26 8.4 gb|GG743906.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 26 8.4 gb|GG743898.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 26 8.4 gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 26 8.4 >gb|GG743949.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.67, whole genome shotgun sequence Length = 182362 Score = 31.2 bits (69), Expect = 0.20 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = -3 Query: 56 PFGGGRSVGHAPRGPNIHGLPKGSLTGGCATGUR 89 P G G H PRGP HG +G L GG T R Sbjct: 116012 PSGTGSCPAHHPRGPRGHG--RGGLPGGSRTSCR 115917 >gb|GG743909.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.27, whole genome shotgun sequence Length = 414067 Score = 28.1 bits (61), Expect = 1.7 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +3 Query: 58 GGGRSVGHAPRGPNIHGLPKGSLTGGCATG 87 G GRS G P GP P+G+ G C+ G Sbjct: 180291 GSGRSDGSTPEGPT----PRGAARGPCSRG 180368 >gb|GG743946.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.64, whole genome shotgun sequence Length = 208489 Score = 26.6 bits (57), Expect = 4.9 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 49 RSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSLTG 82 RS++R+ G + APRGP +P GS TG Sbjct: 31599 RSSSRVPRRVGSEAARSAPRGPFSACVPSGSGTG 31498 >gb|GG743940.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.58, whole genome shotgun sequence Length = 207405 Score = 26.6 bits (57), Expect = 4.9 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = +2 Query: 41 VSQHVQEY--RSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSLTGGCATG 87 VS H + + +R+VP G G + G P H L SLT GC G Sbjct: 131384 VSMHTRRC*RQGASRVVPIGHGGASGDLSLMPLTHNLSVMSLT-GCGFG 131527 Score = 25.8 bits (55), Expect = 8.4 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 17 LVDFFLSILRLMWLFFATLVSSEP 40 LV FFL+ RL W F ++ P Sbjct: 137940 LVSFFLAYARLRWTFMCVYMTGRP 138011 >gb|GG743888.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.6, whole genome shotgun sequence Length = 961754 Score = 26.6 bits (57), Expect = 4.9 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 58 GGGRSVGHAPRGPNIHGLPKGSLTG 82 G GR HAP P GLP G + G Sbjct: 42464 GPGRGHAHAP*DPREQGLPAGHVPG 42538 >gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.1, whole genome shotgun sequence Length = 1615555 Score = 26.6 bits (57), Expect = 4.9 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Frame = -1 Query: 39 EPVSQHVQEYR----STTRIVPFGGGRSVGHA 66 EP +HVQ + R+ P GGG S GHA Sbjct: 484219 EPGRRHVQRHAPQEVGEPRVQPGGGGHSGGHA 484124 >gb|GG743901.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.19, whole genome shotgun sequence Length = 569072 Score = 26.2 bits (56), Expect = 6.4 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%) Frame = +3 Query: 49 RSTTRIVP--FGGGRSVGHAPRGPNIHGLPKGSLTGGCATGUR 89 RS +P FGG G PRG H + T CAT R Sbjct: 414891 RSANGALPSLFGGRARRGRPPRGEGTHRGRPATRTAPCATSSR 415019 >gb|GG744684.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.802, whole genome shotgun sequence Length = 5530 Score = 25.8 bits (55), Expect = 8.4 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 9/56 (16%) Frame = -1 Query: 43 QHVQEYRSTTRIVPFGGGRSVGHA--------PRGPNIHGLPKGSLTG-GCATGUR 89 Q V+ + +R GR GH PRG HG P+G G G A G R Sbjct: 2617 QEVERTCAASRSAAEARGRQAGHGR*GHAREPPRGVRAHGRPQGR*HGDGQARGSR 2450 >gb|GG743938.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.56, whole genome shotgun sequence Length = 239031 Score = 25.8 bits (55), Expect = 8.4 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Frame = +1 Query: 46 QEYRSTTRIVPFGGGRSVGHAPRGP---NIHGLPKGSL---TGGCATG 87 + +R R+ P GGG + H RGP +H +G L GG +G Sbjct: 135229 RRHRRRGRMWPAGGGAAYPHRTRGPWALMLHRSSRGPLEAQRGGACSG 135372 >gb|GG743913.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.31, whole genome shotgun sequence Length = 358087 Score = 25.8 bits (55), Expect = 8.4 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = -1 Query: 49 RSTTRIVPFGGGRSVG--HAPRGPNIHGLPKGSLTGGC 84 RS T GG R++G R P+ HG + +L G C Sbjct: 271546 RS*TSPTGLGGARALGLQGRSRSPSAHGATRRTLRGSC 271433 >gb|GG743906.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.24, whole genome shotgun sequence Length = 471063 Score = 25.8 bits (55), Expect = 8.4 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 58 GGGRSVGHAPRGPNIHGLPK 77 G R++G PRG +HG+P+ Sbjct: 124061 GHWRALGAGPRGRRLHGVPR 124120 >gb|GG743898.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.16, whole genome shotgun sequence Length = 619246 Score = 25.8 bits (55), Expect = 8.4 Identities = 16/60 (26%), Positives = 24/60 (40%) Frame = -3 Query: 25 LRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSLTGGC 84 L + W + T + V+ H + S I G R + RGP + P+G L C Sbjct: 486470 LAVHWPYIPTTHDTRVVTPHCSQ--SNAGIACLSGCRPACFSVRGPRANQNPRGCLVTNC 486297 >gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.5, whole genome shotgun sequence Length = 1129684 Score = 25.8 bits (55), Expect = 8.4 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = -3 Query: 38 SEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKG 78 S P + Q R GRS PRGP+ H P+G Sbjct: 991961 SSPCGRSWQSGAGAARSGRGAAGRSPRARPRGPSPHASPRG 991839 Database: S.parasitica/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 53,132,636 Number of sequences in database: 1445 Lambda K H 0.323 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,645,412 Number of Sequences: 1445 Number of extensions: 97563 Number of successful extensions: 771 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 194 Number of HSP's successfully gapped in prelim test: 39 Number of HSP's that attempted gapping in prelim test: 389 Number of HSP's gapped (non-prelim): 539 length of query: 89 length of database: 17,710,878 effective HSP length: 64 effective length of query: 25 effective length of database: 17,618,398 effective search space: 440459950 effective search space used: 440459950 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 54 (25.4 bits)