TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743888.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    27   4.1  

>gb|GG743888.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.6, whole
             genome shotgun sequence
          Length = 961754

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = -2

Query: 1     MDDRKENKKNADYEIFLRDRKLKYEKIRKRNA 32
             ++DR+  +K  ++ +FLRDR L+ E+++K  A
Sbjct: 37786 VEDRERARKMVEHLLFLRDRALR-ERVQKEAA 37694


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,369,273
Number of Sequences: 1445
Number of extensions: 19488
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 24
length of query: 116
length of database: 17,710,878
effective HSP length: 89
effective length of query: 27
effective length of database: 17,582,273
effective search space: 474721371
effective search space used: 474721371
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)