TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000055_1.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Anopheles gambiae # Complete (396 letters) Database: S.parasitica/genome.fa 1445 sequences; 53,132,636 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG743906.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 159 1e-53 gb|GG743981.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 31 2.3 gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 31 3.0 gb|GG743897.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 30 5.2 gb|GG743913.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 30 6.7 gb|GG744043.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 29 8.8 >gb|GG743906.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.24, whole genome shotgun sequence Length = 471063 Score = 159 bits (402), Expect(3) = 1e-53 Identities = 92/193 (47%), Positives = 117/193 (60%), Gaps = 35/193 (18%) Frame = +3 Query: 120 GKIACANVLSDLYAMGVTEVDNMLMLLAVSTKMIEKERDVVIPLIMRGFKDSALEAGTSV 179 G+IACANVLSDLYAMGVTEVD MLM+L VS M + ERDVV ++ GF D A EAGT+V Sbjct: 142827 GRIACANVLSDLYAMGVTEVDTMLMILGVSRTMTDLERDVVTTQLIHGFNDLAREAGTNV 143006 Query: 180 TGGHSVVNPWCTIGGVA-----------------TTICQQNEFIVPDNAVVGDVLVLTKA 222 TGG +V+NPW +GGVA T I ++E I P+NA G +LVLTK Sbjct: 143007 TGGQTVMNPWPIVGGVAMSVRAGSPMFSSTKRNLTNIHLESEIIRPENATAGQMLVLTKP 143186 Query: 223 LG------------------TQVAVNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSM 264 LG TQ+AVNA+Q DQ RW++++ ++ E +A+ A +SM Sbjct: 143187 LGCALVLGGEFIASCCHAHSTQLAVNAYQMKDQPARWSKVESFLTREMADRAFSVASESM 143366 Query: 265 SRLNRVAARLMHK 277 SRLN A+LMHK Sbjct: 143367 SRLNVNGAKLMHK 143405 Score = 70.9 bits (172), Expect(2) = 6e-14 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 23/148 (15%) Frame = +2 Query: 229 VNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNRVAARLMHKYNA-HG---AT 284 V ++LD + R++ + ++ + R + + ++ MH +A HG AT Sbjct: 143297 VQGRKFLDAGDGRPRVQRRIRVDEPTQRQRRQAHAQGIITTCSSGNMHTDHA*HGVTSAT 143476 Query: 285 DVTGFGLLGHAQ-------------------TLASHQKNEVSFVIHNLPVIAKMAAVAKA 325 DVTGFG+LGHAQ +A+ QK +V F +H LPVI M AV +A Sbjct: 143477 DVTGFGILGHAQYGNTIGV*LLLTLAFAAARNMATSQKADVDFELHTLPVIKDMLAVNEA 143656 Query: 326 CGNMFQLLQGHSAETSGGLLICLPREQA 353 ++L G S+ETSGGLL+ + ++A Sbjct: 143657 FNGQWRLELGFSSETSGGLLVSIDADRA 143740 Score = 45.8 bits (107), Expect(3) = 1e-53 Identities = 22/45 (48%), Positives = 28/45 (62%) Frame = +1 Query: 23 RRPFDPTAHDLDASFRLTRFADLKGRCCKVPKEVLEKLVSSLQQD 67 R PF+PT H L FRLT F+ LKG CK+P+E L +S + D Sbjct: 142474 RAPFNPTDHGLREDFRLTDFSALKG*GCKLPQEKLLSYISGIAND 142608 Score = 45.1 bits (105), Expect(3) = 1e-53 Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 3/35 (8%) Frame = +2 Query: 87 GLDCSVIPLRH---GGLCMVQTTDFFYPIVDDPYM 118 G+D SV+ ++H G L M+ TTDFFYP+V DPY+ Sbjct: 142676 GMDSSVVKIKHPKFGDLYMISTTDFFYPLVQDPYV 142780 Score = 25.4 bits (54), Expect(2) = 6e-14 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +1 Query: 355 AYCKDIEKQEGCQAWIIGIVEKGSRTARIIDKPRVIEV 392 A+ D+ + AWI+G V +G++ AR+ +E+ Sbjct: 143788 AFIDDLVALDMQPAWIVGRVVQGTKQARLAPDVTFVEI 143901 >gb|GG743981.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.99, whole genome shotgun sequence Length = 152004 Score = 31.2 bits (69), Expect = 2.3 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = -2 Query: 199 ICQQNEFIVPDNAVVGDVLVLTKALGTQVAVNAHQWLDQSERWNRIKLVVSEEDVRKAYH 258 I +N+ P A +G LVL++ V SERWN +V + DVR + Sbjct: 8354 ILMRNQSPSPPPAALGLWLVLSQNC---TVVRLSTIPSASERWNSTYVVATSRDVRASIL 8184 Query: 259 RAMDSMSRLNR 269 R+MD + R Sbjct: 8183 RSMDETIEMRR 8151 >gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.5, whole genome shotgun sequence Length = 1129684 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +1 Query: 173 LEAGTSVTGGHSVVNPWC-TIGGVATTICQQN 203 ++AGT+ T +V+ PWC T G T C QN Sbjct: 373315 VDAGTNTTSTSTVLVPWCFTYSGPMKTCCTQN 373410 >gb|GG743897.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.15, whole genome shotgun sequence Length = 605348 Score = 30.0 bits (66), Expect = 5.2 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +1 Query: 23 RRPFDPTAHDLDASFRLTRF--ADLKGRCCKVPKEVLEKLVSSLQQD 67 R D D SFR +F ADL CK PKE+ K V ++ +D Sbjct: 376012 RVELDEMGPRFDLSFRRHKFGSADLMKAACKKPKELAPKKVKNITRD 376152 >gb|GG743913.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.31, whole genome shotgun sequence Length = 358087 Score = 29.6 bits (65), Expect = 6.7 Identities = 34/143 (23%), Positives = 56/143 (39%) Frame = -2 Query: 213 VGDVLVLTKALGTQVAVNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNRVAA 272 VGD L + G + V +W + R + ++ + V H A Sbjct: 118917 VGDALAVRWRRGRRRRVRRVRWRHRVRRGHVGRVRTTLAHVHTHVH-----------AVA 118771 Query: 273 RLMHKYNAHGATDVTGFGLLGHAQTLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQL 332 L+H +A A V GL + +A+H + + +H V A +AAVA + Sbjct: 118770 HLLHLGHAVHAHHVVAMGLAVVRRHVAAHAGH--AHRVHGRGVAAAVAAVAAGHAHAHAH 118597 Query: 333 LQGHSAETSGGLLICLPREQAAA 355 + GH+A G ++ R AA Sbjct: 118596 VHGHAAVRHAGHVVHAGRVHHAA 118528 >gb|GG744043.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.161, whole genome shotgun sequence Length = 75022 Score = 29.3 bits (64), Expect = 8.8 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Frame = +2 Query: 143 LMLLAVSTKMIEKERDVVIPLIMRGFKDSALE---AGTSVTGGHSVVNPWCTIGGVATTI 199 L L ST + K ++ +P IMR D E AG SV G V+N GGV T + Sbjct: 31505 LTLK*TSTNKMRKTSEMPMP-IMRIVVDEMPELDAAGASVGGAVVVINGVVAPGGVETGV 31681 Query: 200 CQQNEFIVPDNAVVGDVLVL 219 + ++ VV L++ Sbjct: 31682 VETGGVVLEGVVVVASALIV 31741 Database: S.parasitica/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 53,132,636 Number of sequences in database: 1445 Lambda K H 0.322 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,530,913 Number of Sequences: 1445 Number of extensions: 409907 Number of successful extensions: 1977 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 47 Number of HSP's that attempted gapping in prelim test: 1588 Number of HSP's gapped (non-prelim): 913 length of query: 396 length of database: 17,710,878 effective HSP length: 106 effective length of query: 290 effective length of database: 17,557,708 effective search space: 5091735320 effective search space used: 5091735320 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)