TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    39   6e-04
gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   4.0  
gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   6.8  

>gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582013,
              whole genome shotgun sequence
          Length = 390037

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = -2

Query: 1      MVYISNGQVLDSRNQSPWRVSFLTDFFWGIAEFV----VFF 37
              M YI++G V+  R  S WRVS ++D FWGI  F+    VFF
Sbjct: 296565 MTYITSGDVVQKR--SIWRVSIVSDVFWGIVNFIGLLCVFF 296449


>gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020,
             whole genome shotgun sequence
          Length = 790859

 Score = 26.6 bits (57), Expect = 4.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 12    SRNQSPWRVSFLTDFFWGIAEFVV 35
             S + SPW +S   D FWG A  VV
Sbjct: 31553 SLHVSPWAMSGDWDMFWGSANLVV 31624



 Score = 26.6 bits (57), Expect = 4.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 12    SRNQSPWRVSFLTDFFWGIAEFVV 35
             S + SPW +S   D FWG A  VV
Sbjct: 32765 SLHVSPWAMSGDWDMFWGSANLVV 32694


>gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582041,
               whole genome shotgun sequence
          Length = 1261388

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 16      SPWRVSFLTDFFWGIAEFVVFFFKT 40
               SPWR S  +       + VVFFFKT
Sbjct: 1199357 SPWRCSVASPIN*SRGQHVVFFFKT 1199431


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.332    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,414,055
Number of Sequences: 82
Number of extensions: 14453
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 6
length of query: 94
length of database: 14,267,206
effective HSP length: 69
effective length of query: 25
effective length of database: 14,261,548
effective search space: 356538700
effective search space used: 356538700
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 54 (25.4 bits)