TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    40   5e-04
gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   2.3  
gb|GL376605.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   2.3  
gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    25   8.9  

>gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582013,
              whole genome shotgun sequence
          Length = 390037

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -2

Query: 1      MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVL 36
              M YI++G V+  RS   WR+S+++D FWGI  F+ L
Sbjct: 296565 MTYITSGDVVQKRSI--WRVSIVSDVFWGIVNFIGL 296464


>gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020,
             whole genome shotgun sequence
          Length = 790859

 Score = 27.3 bits (59), Expect = 2.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 16    SPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSS 56
             SPW +S   D FWG A  VV  F   +    K+ R    S+
Sbjct: 31565 SPWAMSGDWDMFWGSANLVVEPFGDTMINVPKENRCTSTST 31687



 Score = 26.6 bits (57), Expect = 4.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 16    SPWRLSLITDFFWGIAEFVV 35
             SPW +S   D FWG A  VV
Sbjct: 32753 SPWAMSGDWDMFWGSANLVV 32694


>gb|GL376605.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582008,
              whole genome shotgun sequence
          Length = 1405322

 Score = 27.3 bits (59), Expect = 2.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 25     DFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYDD 62
              D  W  AEF+   +K   QQ   +     +++D  YDD
Sbjct: 647204 DGCWSKAEFLAFVYKIFPQQIFPQNEGEADATDEAYDD 647317


>gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581789,
              whole genome shotgun sequence
          Length = 837833

 Score = 25.4 bits (54), Expect = 8.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 4      ISNGQVLDSRSQSPWRLSLITDFFWGIAEFVV 35
              ++N QV  +  +   R + ITDF W IA F V
Sbjct: 600392 VAN*QVYCASLRQM*RFASITDFVWTIASFCV 600297


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,193,000
Number of Sequences: 82
Number of extensions: 29085
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 14
length of query: 94
length of database: 14,267,206
effective HSP length: 69
effective length of query: 25
effective length of database: 14,261,548
effective search space: 356538700
effective search space used: 356538700
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)