TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376602.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    28   1.1  
gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   4.0  
gb|GL376609.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   5.2  
gb|GL376627.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   6.8  
gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    25   8.9  

>gb|GL376602.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold
            scf_1117875582005, whole genome shotgun sequence
          Length = 580922

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 6    HNGR-VWEKRPWDWRRIVELFVGI 28
            H+GR VW +  W WRR V+  VGI
Sbjct: 4282 HDGRIVW*RCSWCWRRAVDPLVGI 4211



 Score = 25.4 bits (54), Expect = 8.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 3      YIDHNGRVWEKRPWDWRRIVELFVGIWFAIKQLFLTFL 40
              Y +HNG+V +   WD R  VE+  GI   +++  L+ L
Sbjct: 417646 YKEHNGKVSKPVLWD-RNFVEMAGGIPLPLQESALSLL 417756


>gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582034,
              whole genome shotgun sequence
          Length = 1169325

 Score = 26.6 bits (57), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 4      IDHNGRVWEKRPWDWRRIVELFVGIWFAIKQLFLT 38
              I H+GR   K  W+W  IV+     W A + +F T
Sbjct: 202577 IRHSGRWLSKLKWEWDSIVQ-----WSAHRAIFCT 202666


>gb|GL376609.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582012,
              whole genome shotgun sequence
          Length = 298282

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 22     VELFVGIWFAIKQLFLTFLAPFTGNNNQ 49
              V +F+GI  +IKQ+ LT++A +   + Q
Sbjct: 265936 VRIFLGISISIKQMLLTWIASWKAASKQ 266019


>gb|GL376627.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582030,
             whole genome shotgun sequence
          Length = 300584

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 9     RVWEKRPWDWRRIVELFVGIWFAIKQLFLTFLAP 42
             R+W+ + W W        GIW  I +L   F  P
Sbjct: 74913 RIWQAKAWVWAA-----RGIWSRIPRLIFNFRPP 74827


>gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582039,
               whole genome shotgun sequence
          Length = 1829366

 Score = 25.4 bits (54), Expect = 8.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 11      WEKRPWDWRR 20
               W +RPW WRR
Sbjct: 1385129 WRQRPWRWRR 1385158


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.328    0.144    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,091,687
Number of Sequences: 82
Number of extensions: 48632
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 34
length of query: 110
length of database: 14,267,206
effective HSP length: 85
effective length of query: 25
effective length of database: 14,260,236
effective search space: 356505900
effective search space used: 356505900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)