TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[translate(1)] (89 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 29 0.62 gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 27 3.1 gb|GL376623.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 27 4.0 gb|GL376632.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 26 6.8 gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 26 6.8 gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 gb|GL376607.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 gb|GL376603.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 25 8.9 >gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582028, whole genome shotgun sequence Length = 960197 Score = 29.3 bits (64), Expect = 0.62 Identities = 19/50 (38%), Positives = 25/50 (50%) Frame = -1 Query: 16 SLVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGH 65 SL+ FFL R W+F TLVS ++ +Q P G GR+V H Sbjct: 183776 SLIFFFLLSSRTSWVFSNTLVSLPTIAMRLQ-------TKPCG*GRAVIH 183648 >gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581354, whole genome shotgun sequence Length = 1199448 Score = 26.9 bits (58), Expect = 3.1 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -2 Query: 56 PFGGGRSVGHAPRGP-NIHGLPKGSLTG 82 P G R VGHA RGP ++ G +G+ G Sbjct: 884009 PLGS*RCVGHADRGPVHVRGPERGTAGG 883926 >gb|GL376623.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582026, whole genome shotgun sequence Length = 637279 Score = 26.6 bits (57), Expect = 4.0 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -1 Query: 20 FFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVP 56 FFL +L+ F+ SS + + V+++RST+R P Sbjct: 217552 FFLVLLKRTLEEFSQFRSSSQIDRRVRQWRSTSRDFP 217442 >gb|GL376632.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582035, whole genome shotgun sequence Length = 696189 Score = 25.8 bits (55), Expect = 6.8 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 20 FFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRI 54 F L+ L L + F TLVS P+++ + STT+I Sbjct: 673945 FVLNYLHLFFSFALTLVSFLPLARIATTHYSTTQI 674049 >gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582023, whole genome shotgun sequence Length = 1683196 Score = 25.8 bits (55), Expect = 6.8 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = +1 Query: 30 LFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLP 76 +FF +SS P +H Q + V GGR H G N+ LP Sbjct: 36283 VFFRCFISSVPTLEHAQSH------VEVDGGRR-HHEGHGTNLRHLP 36402 >gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582039, whole genome shotgun sequence Length = 1829366 Score = 25.4 bits (54), Expect = 8.9 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = -1 Query: 10 VDSKPFSLVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGH 65 +DS P FL + R+ F A + P+ HV+ RST + +G H Sbjct: 665054 IDSPPAYATHQFLCVARIYEAFCAP*M---PICAHVRTSRSTCSTILYGNRPCASH 664896 >gb|GL376607.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582010, whole genome shotgun sequence Length = 314107 Score = 25.4 bits (54), Expect = 8.9 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -1 Query: 55 VPFGGGRSVGHAPRGPNIHGLPKGSLTGGCATGUR 89 VP G +V APR +HG+P + G C R Sbjct: 209716 VPAGRAHAV-RAPRESRVHGVPWATNLGSCRARAR 209615 >gb|GL376603.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582006, whole genome shotgun sequence Length = 1270039 Score = 25.4 bits (54), Expect = 8.9 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Frame = -1 Query: 38 SEPVSQHVQEYRSTTRIVPFGGGRSVGHA-PRGPNIHGLP 76 SEP H R R++P GR GH PR ++G P Sbjct: 1230121 SEPARCHRVLERRQQRVLPHRLGREHGHGRPRV*KVYGFP 1230002 >gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313, whole genome shotgun sequence Length = 1115623 Score = 25.4 bits (54), Expect = 8.9 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +3 Query: 7 GRVVDSKPFSLVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRST 51 G V +SK + ++ F S L A+L SEP S HV E RST Sbjct: 1034289 GAVQNSKMYDEINHFASGPH-GGLGEASLEDSEPESAHVHETRST 1034420 >gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581242, whole genome shotgun sequence Length = 870537 Score = 25.4 bits (54), Expect = 8.9 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = -2 Query: 59 GGRSVGHAPRGPNIH 73 G R+V H P+GP++H Sbjct: 854216 GARAVRHQPQGPDVH 854172 Score = 25.4 bits (54), Expect = 8.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = -1 Query: 26 RLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSV 63 RL F +VS V Q+Y TTR +PF ++ Sbjct: 333474 RLQRQAFTEIVSDNIVQLEKQQYDLTTRYLPFSDSSTI 333361 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.323 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,964,296 Number of Sequences: 82 Number of extensions: 67966 Number of successful extensions: 410 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 392 Number of HSP's gapped (non-prelim): 60 length of query: 89 length of database: 14,267,206 effective HSP length: 64 effective length of query: 25 effective length of database: 14,261,958 effective search space: 356548950 effective search space used: 356548950 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 54 (25.4 bits)