TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete (448 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 185 2e-78 gb|GL376558.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 0.76 gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 2.9 gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 6.4 >gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582037, whole genome shotgun sequence Length = 1414051 Score = 185 bits (470), Expect(2) = 2e-78 Identities = 96/193 (49%), Positives = 131/193 (67%), Gaps = 1/193 (0%) Frame = +3 Query: 234 NEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMF 293 +E I P +A VGDV++LTK LGTQVAVN QW PERW +V VV+ ++ E + A Sbjct: 791511 SEIIRPVNAQVGDVIILTKALGTQVAVNLFQWRKRPERWQRVADVVTVQDAEHGFAMASE 791690 Query: 294 NMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAV 353 +M+ LN AA LMH + AH+ATD+TGFGIL H++N AK Q +V+F IH LPII M V Sbjct: 791691 SMSRLNLNAARLMHKYGAHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLPIIQHMVKV 791870 Query: 354 SKASGR-FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNR 412 ++ G F LL+G +AETSGGLL+CLP E A + +E+++ +G AW+VG V G++ Sbjct: 791871 NETIGNSFRLLEGFAAETSGGLLLCLPAEHADAYIAELRAL---DGKPAWVVGRVVAGSK 792041 Query: 413 TARIIDKPRVIEV 425 ARI+ P ++EV Sbjct: 792042 DARIVANPTILEV 792080 Score = 126 bits (317), Expect(2) = 2e-78 Identities = 76/194 (39%), Positives = 97/194 (50%), Gaps = 1/194 (0%) Frame = +2 Query: 38 FEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEAS 97 F+P LGL PS+ LT FS +KG GCK+PQ LL L + D++P Sbjct: 790916 FDPVDLGLDPSFTLTDFSALKGCGCKLPQAKLLGYLEDIAN-DLKP-------------- 791050 Query: 98 QEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-GLSLVQTTDFFYPLVEDPYMMGRIACA 156 +P GMDS V+ + HG L ++ TTDFF+P VEDPY+ G+IACA Sbjct: 791051 ---------NETP-------GMDSSVVKISHGKDLYMISTTDFFFPSVEDPYVQGKIACA 791182 Query: 157 NVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXXXXXXX 216 NVLSD+YAMG+TE D R+ VT M++GF D Sbjct: 791183 NVLSDVYAMGVTEVDTMLMILGVCRDMSEKERDVVTTQMIRGFNDLARKAETNVTGGQTV 791362 Query: 217 XNPWIIIGGVATVV 230 NPW I+GGVA V Sbjct: 791363 MNPWPIVGGVAMSV 791404 >gb|GL376558.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581239, whole genome shotgun sequence Length = 719819 Score = 32.7 bits (73), Expect = 0.76 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = -2 Query: 278 VVSREEVELAYQEAMFNMATLNRTAAGLM--HTFNAHAATDITGFGILGHSQNLAKQQRN 335 VV RE++E Q + ++ R A L H AH+ D F L H + R+ Sbjct: 474853 VVDREDLEQVRQ-VVDHLTEDIRVARELEQPHREIAHSLDDFDHFAALAHRVGIVLDNRD 474677 Query: 336 EVSFVIHNLPIIAKMAAVS 354 E V+H LP++A+ ++ Sbjct: 474676 EQLLVLHVLPVVAQTLLIA 474620 >gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582039, whole genome shotgun sequence Length = 1829366 Score = 30.8 bits (68), Expect = 2.9 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = +2 Query: 47 PSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGLPAGA 106 P G+ G+ G G + +K+L G D+ P G+G +GG + SQ+ + Sbjct: 645779 PKGECFGYLGINGAG----KTTTMKMLTG----DIIPTSGQGTLGGFDILSQQIEIRRLI 645934 Query: 107 GPSPTFPAL 115 G P F AL Sbjct: 645935 GYCPQFDAL 645961 >gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582028, whole genome shotgun sequence Length = 960197 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Frame = +1 Query: 352 AVSKASGRFGLLQGTSAETSGGLL----ICLPREQAARFCSEIKSSKYGEGHQAWIVGIV 407 +VS S + GLLQ +S++ S +C +++A SE SS +Q W G Sbjct: 201271 SVSSLSVQSGLLQDSSSQVSAACSTIPPVCSRTQESATIGSEASSSTP*TCYQPWPRGTS 201450 Query: 408 EKGNRTARI 416 + TAR+ Sbjct: 201451 SHASATARL 201477 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Frame = -3 Query: 352 AVSKASGRFGLLQGTSAETSGGLL----ICLPREQAARFCSEIKSSKYGEGHQAWIVGIV 407 +VS S + GLLQ +S++ S +C +++A SE SS +Q W G Sbjct: 193194 SVSSLSVQSGLLQDSSSQVSAACSTIPPVCSRTQESATIGSEASSSTP*TCYQPWPRGTS 193015 Query: 408 EKGNRTARI 416 + TAR+ Sbjct: 193014 SHASATARL 192988 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,359,883 Number of Sequences: 82 Number of extensions: 276804 Number of successful extensions: 1328 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1241 Number of HSP's gapped (non-prelim): 216 length of query: 448 length of database: 14,267,206 effective HSP length: 106 effective length of query: 342 effective length of database: 14,258,514 effective search space: 4876411788 effective search space used: 4876411788 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)