TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...   148   5e-69
gb|GL376601.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    29   6.6  

>gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582037,
              whole genome shotgun sequence
          Length = 1414051

 Score =  148 bits (373), Expect(2) = 5e-69
 Identities = 83/195 (42%), Positives = 128/195 (65%)
 Frame = +3

Query: 176    EIILPSNAQPGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSECSDADIKETFEIAVK 235
              EII P NAQ GDV++LTK LG Q+A++   W+  + E+++++    +  D +  F +A +
Sbjct: 791514 EIIRPVNAQVGDVIILTKALGTQVAVNLFQWR-KRPERWQRVADVVTVQDAEHGFAMASE 791690

Query: 236    SMTYLNKNAALLMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKF 295
              SM+ LN NAA LMHKY AH ATD+TGFG+L HA N A+ Q   V F+I+ LPII++++K 
Sbjct: 791691 SMSRLNLNAARLMHKYGAHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLPIIQHMVKV 791870

Query: 296    STLVGQSTKFRSGRSVETSGGLLICLPADAADKFCRDFEEATNGEQKSFQIGHVTAANES 355
              +  +G S +   G + ETSGGLL+CLPA+ AD +  +   A +G + ++ +G V A ++ 
Sbjct: 791871 NETIGNSFRLLEGFAAETSGGLLLCLPAEHADAYIAEL-RALDG-KPAWVVGRVVAGSK- 792041

Query: 356    DAVLCEDVEFIEVSL 370
              DA +  +   +EV+L
Sbjct: 792042 DARIVANPTILEVTL 792086



 Score =  132 bits (332), Expect(2) = 5e-69
 Identities = 74/171 (43%), Positives = 100/171 (58%)
 Frame = +2

Query: 1      MFQPEKHGLEPDFQLTKFTTHTGUSCKIPQKVLEKYLRGTEIENKNNDGYLIGSGMDCAV 60
              +F P   GL+P F LT F+   G  CK+PQ  L  YL     + K N+      GMD +V
Sbjct: 790913 IFDPVDLGLDPSFTLTDFSALKGCGCKLPQAKLLGYLEDIANDLKPNET----PGMDSSV 791080

Query: 61     IPLKRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVSTSTS 120
              + +   KD  +I T DFF+P V DP + G+IA ANVLSDVYA+GVT+ DT+ MI+     
Sbjct: 791081 VKISHGKDLYMISTTDFFFPSVEDPYVQGKIACANVLSDVYAMGVTEVDTMLMILGVCRD 791260

Query: 121    FSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSV 171
               SEKERDVV   +++GF +  +      T +   Q  +NPW I+GG+A SV
Sbjct: 791261 MSEKERDVVTTQMIRGFNDLARK---AETNVTGGQTVMNPWPIVGGVAMSV 791404


>gb|GL376601.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581991,
              whole genome shotgun sequence
          Length = 484626

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 39     GTEIENKNNDGYLIGSGMDCAVIPLKRH 66
              G E + +  DG++I   +DCAV  + RH
Sbjct: 280119 GLETDQERRDGWVIAERLDCAVAHVHRH 280202


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,076,108
Number of Sequences: 82
Number of extensions: 212877
Number of successful extensions: 935
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 36
length of query: 370
length of database: 14,267,206
effective HSP length: 104
effective length of query: 266
effective length of database: 14,258,678
effective search space: 3792808348
effective search space used: 3792808348
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)