TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000047_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Drosophila melanogaster # Complete
         (398 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...   209   8e-98
gb|GL376558.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    33   0.50 
gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    29   9.5  

>gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582037,
              whole genome shotgun sequence
          Length = 1414051

 Score =  209 bits (532), Expect(2) = 8e-98
 Identities = 103/194 (53%), Positives = 133/194 (68%)
 Frame = +3

Query: 205    NEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLVVSEEDVRKAYHRAMN 264
              +E I P NA VGDV++LTK LGTQVAVN  QW  +PERW R+  VV+ +D    +  A  
Sbjct: 791511 SEIIRPVNAQVGDVIILTKALGTQVAVNLFQWRKRPERWQRVADVVTVQDAEHGFAMASE 791690

Query: 265    SMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAV 324
              SM+RLN  AARLMHKY AH ATD+TGFG+L HA+  A  Q +DV+F IH LP+I  M  V
Sbjct: 791691 SMSRLNLNAARLMHKYGAHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLPIIQHMVKV 791870

Query: 325    AKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTAR 384
               +  GN F+LL+G +AETSGGLL+CLP E A AY  ++   +G  AW++G V  G+K AR
Sbjct: 791871 NETIGNSFRLLEGFAAETSGGLLLCLPAEHADAYIAELRALDGKPAWVVGRVVAGSKDAR 792050

Query: 385    IIDKPRVIEVPAKD 398
              I+  P ++EV  +D
Sbjct: 792051 IVANPTILEVTLED 792092



 Score =  167 bits (423), Expect(2) = 8e-98
 Identities = 91/176 (51%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
 Frame = +2

Query: 27     FDPTAHDLDASFRLTRFADLKGRGCKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRI 86
              FDP    LD SF LT F+ LKG GCK+PQ   +KL+  L+             N   P  
Sbjct: 790916 FDPVDLGLDPSFTLTDFSALKGCGCKLPQ---AKLLGYLED----------IANDLKPNE 791056

Query: 87     GIGLDCSVIPLRHG-GLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNML 145
                G+D SV+ + HG  L ++ TTDFF+P V+DPY+ GKIACANVLSD+YAMGVT+ D ML
Sbjct: 791057 TPGMDSSVVKISHGKDLYMISTTDFFFPSVEDPYVQGKIACANVLSDVYAMGVTEVDTML 791236

Query: 146    MLLAVSTKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVASTI 201
              M+L V   M+EKERDVV   ++RGF D A +A T VTGGQ+V+NPW  +GGVA ++
Sbjct: 791237 MILGVCRDMSEKERDVVTTQMIRGFNDLARKAETNVTGGQTVMNPWPIVGGVAMSV 791404


>gb|GL376558.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581239,
              whole genome shotgun sequence
          Length = 719819

 Score = 33.1 bits (74), Expect = 0.50
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -2

Query: 249    VVSEEDVRKAYHRAMNSMARLNRVAARLM--HKYNAHGATDITGFGLLGHAQTLAAHQKK 306
              VV  ED+ +   + ++ +    RVA  L   H+  AH   D   F  L H   +    + 
Sbjct: 474853 VVDREDLEQV-RQVVDHLTEDIRVARELEQPHREIAHSLDDFDHFAALAHRVGIVLDNRD 474677

Query: 307    DVSFVIHNLPVIAKMAAVA 325
              +   V+H LPV+A+   +A
Sbjct: 474676 EQLLVLHVLPVVAQTLLIA 474620


>gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581354,
              whole genome shotgun sequence
          Length = 1199448

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 318    IAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYC 359
              ++++ ++   C    Q LQG S + S G+  C+ R +A  YC
Sbjct: 204556 VSQLKSLVLDCKRSIQSLQGVSLDLSTGMNNCVTR*RARVYC 204431


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,051,129
Number of Sequences: 82
Number of extensions: 307159
Number of successful extensions: 1368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 206
length of query: 398
length of database: 14,267,206
effective HSP length: 104
effective length of query: 294
effective length of database: 14,258,678
effective search space: 4192051332
effective search space used: 4192051332
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)