TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   1.7  
gb|CM000625.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    26   3.8  
gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    25   8.4  

>gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 16, whole genome shotgun
              sequence
          Length = 764225

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -2

Query: 11     DSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRY 60
              D +S + WR++++ DFF   +E V       +++  K RR  G SS+ +Y
Sbjct: 216583 DKQSLASWRVAMVADFF-DESEIVP------MERGPKGRR*LGTSSNCKY 216455


>gb|CM000625.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 23, whole genome shotgun
              sequence
          Length = 512847

 Score = 25.8 bits (55), Expect = 3.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 7      GQVLDSRSQSPWRLSLITDFFWGI 30
              G V  S S S    S ITDF+WG+
Sbjct: 109307 GHVAPSSSDSGTNGSWITDFYWGM 109378


>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
               sequence
          Length = 2535400

 Score = 24.6 bits (52), Expect = 8.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 9       VLDSRSQSPWRLSLITDFFWGIAEF 33
               V+ +++++PW + L T + WG+  F
Sbjct: 1867482 VIMTKAKNPWTVRLETTWRWGLRAF 1867556


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,830,651
Number of Sequences: 31
Number of extensions: 17513
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 9
length of query: 94
length of database: 7,911,228
effective HSP length: 69
effective length of query: 25
effective length of database: 7,909,089
effective search space: 197727225
effective search space used: 197727225
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)