TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000633.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   1.8  
gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   2.4  
gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    26   3.1  
gb|CM000617.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    25   9.1  
gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    25   9.1  

>gb|CM000633.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 31, whole genome
             shotgun sequence
          Length = 258242

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 5     DHNGRVWEKRPWDWRR 20
             +H G+VW +R  DWRR
Sbjct: 53039 NHQGQVWWRRDSDWRR 52992


>gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun
              sequence
          Length = 829358

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 8      GRVWEKRPWDWRRIVELFVGIW--FAIKQLFLTFLAPFTG 45
              GR+W +R   W+R + +  G W    ++   L  LA F G
Sbjct: 236839 GRLWRRRRKRWQRRLRIGYGRWQRLLLQVFLLLLLAVFCG 236720



 Score = 25.8 bits (55), Expect = 4.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 12     EKRPWDWRRI--VELFVGIWFAIKQLFLTFLAPF 43
              +++ WDWRR   + LFVG  F    L LT LA +
Sbjct: 280237 DQKDWDWRRYLGLGLFVGTLFG--TLVLTQLAAY 280142


>gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun
              sequence
          Length = 1035082

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 2      VYIDHNGRVWEKRPWDWRRIVELFVGIWFAI 32
              ++  +NGR +  R W  R     F+  WF I
Sbjct: 307197 IFTTYNGRSFHCRSWFHREYYSCFLDCWFRI 307289


>gb|CM000617.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 15, whole genome shotgun
              sequence
          Length = 814910

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 5      DHNGRVWEKRPW 16
              D NG +WE  PW
Sbjct: 158852 DSNGSIWETEPW 158817


>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun
              sequence
          Length = 976485

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 3      YIDHNGRVWEKRPW 16
              Y   +GR+W +RPW
Sbjct: 387264 YQQQDGRLWPRRPW 387223


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.328    0.144    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,940,389
Number of Sequences: 31
Number of extensions: 28904
Number of successful extensions: 352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 39
length of query: 110
length of database: 7,911,228
effective HSP length: 83
effective length of query: 27
effective length of database: 7,908,655
effective search space: 213533685
effective search space used: 213533685
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)