TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[translate(1)] (89 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 0.58 gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 1.3 gb|CM000624.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 26 2.9 gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 26 2.9 gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 26 2.9 gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 4.9 gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 4.9 gb|CM000631.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 8.4 >gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun sequence Length = 829358 Score = 28.5 bits (62), Expect = 0.58 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = -1 Query: 6 NGRVVDSKPFSLVDFFLSILRLMWLFFATLVSSE 39 +GR V +PF L FFL +L L LFF V E Sbjct: 576818 SGRYVHGEPFHLFFFFLLLLLLDELFFKRRVVGE 576717 >gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 2, whole genome shotgun sequence Length = 1497954 Score = 27.3 bits (59), Expect = 1.3 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +1 Query: 54 IVPFGGGRSVGHAPRGPNIHGLPKGS--LTGGCATGUR 89 + P+GGGR G GP +G+ +G+ GG G R Sbjct: 1427911 VTPYGGGRPGGGFRDGPTPYGMGRGNGDRYGGLPPGGR 1428024 Score = 25.4 bits (54), Expect = 4.9 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%) Frame = -3 Query: 27 LMWLFFATLVSSE----PVSQHVQEYRSTTR 53 L+WL ATLV S+ P Q YR T R Sbjct: 597505 LLWLVIATLVKSQLEKVPFGTAGQTYRQTNR 597413 >gb|CM000624.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 22, whole genome shotgun sequence Length = 591336 Score = 26.2 bits (56), Expect = 2.9 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -1 Query: 50 STTRIVPFGGGRSVGHAPRGPNI 72 S TR+V + GH+PR PN+ Sbjct: 197574 SLTRVVAHCESKRTGHSPRNPNL 197506 Score = 25.0 bits (53), Expect = 6.4 Identities = 18/68 (26%), Positives = 29/68 (42%) Frame = +2 Query: 17 LVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLP 76 L+ FFL++ + WLF +++ +EP V T GR+ + G N G Sbjct: 185846 LLYFFLTLQYIAWLFRSSVDQNEPSEGLVHSRDGTF-------GRNPEESSLGRNSGGAV 186004 Query: 77 KGSLTGGC 84 + S C Sbjct: 186005 RSSAISRC 186028 >gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 18, whole genome shotgun sequence Length = 702471 Score = 26.2 bits (56), Expect = 2.9 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = -2 Query: 41 VSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNI 72 V Q EY S R PFG RS G RGPN+ Sbjct: 64223 VHQPGTEY-SRLRSGPFGHARSQGGKTRGPNL 64131 Score = 24.6 bits (52), Expect = 8.4 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = -1 Query: 27 LMWLFFATLVSSEPVSQHVQEYRSTTR 53 + WL+F TL+ ++ Y+STT+ Sbjct: 395892 IAWLYFITLMEDTGAGYVMEYYQSTTK 395812 >gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun sequence Length = 1007773 Score = 26.2 bits (56), Expect = 2.9 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = +1 Query: 24 ILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFG--GGRSVGHAPRGPNIHGLPKG 78 +L L+W V + +HV +S TR + FG G R G RGP + P G Sbjct: 509470 LLCLLWTAAYFRVEAFHARRHVPRIQSRTRCLGFGR*GSRDCGR-ERGPAKNQRPNG 509637 Score = 25.4 bits (54), Expect = 4.9 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = -1 Query: 55 VPFGGGRSVGHAPRGPNIHGLPK 77 +PFG G H P G N G P+ Sbjct: 258628 IPFGNGYGYNHIPDGDNEIGRPE 258560 Score = 25.4 bits (54), Expect = 4.9 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = +1 Query: 35 LVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAP--RGPNIH 73 L SS PVS ++R+ T+ VP G + H P PN H Sbjct: 918439 LDSSSPVSIPPAKHRTCTKPVPAGTCTNSSHPPLAHDPNPH 918561 Score = 25.4 bits (54), Expect = 4.9 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = +1 Query: 35 LVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAP--RGPNIH 73 L SS PVS ++R+ T+ VP G + H P PN H Sbjct: 933088 LDSSSPVSIPPAKHRTCTKPVPAGTCTNSSHPPLAHDPNPH 933210 Score = 25.0 bits (53), Expect = 6.4 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = +2 Query: 27 LMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLPK 77 ++W+F + S + S R+ GRS PRG ++H +PK Sbjct: 469208 VVWIFIVARTRTRDRSVASLDGTSGDRLYRQSSGRS----PRGTHVHDIPK 469348 Score = 24.6 bits (52), Expect = 8.4 Identities = 11/24 (45%), Positives = 12/24 (50%) Frame = -3 Query: 61 RSVGHAPRGPNIHGLPKGSLTGGC 84 R +GH G HG P SLT C Sbjct: 487301 RPMGHCSVGMYTHGFP*ASLTVNC 487230 >gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 9, whole genome shotgun sequence Length = 1002813 Score = 25.4 bits (54), Expect = 4.9 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +1 Query: 58 GGGRSVGHAPRGPNIHGLPKGSLTGGCAT 86 G +++ A RGP G P+ ++T C T Sbjct: 857887 GQKKALARAGRGPETSGRPETTMTTSCGT 857973 >gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 7, whole genome shotgun sequence Length = 1029019 Score = 25.4 bits (54), Expect = 4.9 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Frame = -2 Query: 8 RVVD-----SKPFSLVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRS 62 RVVD S +S VD I ++ + + V + + +R R+V R Sbjct: 991533 RVVDYAFFRSATYSKVDNHSEIHYFLYCSLINTIEFQRVVRP-RTFRRKCRVVLCHPRRQ 991357 Query: 63 VGHAPRGPNIHGL 75 +GH R P HGL Sbjct: 991356 IGHIARLPRFHGL 991318 >gb|CM000631.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 29, whole genome shotgun sequence Length = 384256 Score = 24.6 bits (52), Expect = 8.4 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = -2 Query: 54 IVPFGGGRSVGHAPRGPNIHGLPKGSLTGGCATGUR 89 I P GGRSVG R P + LP + G TG R Sbjct: 229758 IQPDPGGRSVGRQRRNPRQNVLPTAPVR*G-RTGRR 229654 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.323 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,830,977 Number of Sequences: 31 Number of extensions: 40684 Number of successful extensions: 213 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 179 Number of HSP's gapped (non-prelim): 83 length of query: 89 length of database: 7,911,228 effective HSP length: 64 effective length of query: 25 effective length of database: 7,909,244 effective search space: 197731100 effective search space used: 197731100 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 51 (24.3 bits)