TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    26   3.7  

>gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 7, whole genome
             shotgun sequence
          Length = 1029019

 Score = 26.2 bits (56), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 18    RDRKLKYEKIRKRNALHNKFILP 40
             R  + K +KIR RN L N+F+ P
Sbjct: 21536 RKSQFKTKKIRSRNVLENQFLNP 21604


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,733,094
Number of Sequences: 31
Number of extensions: 11830
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 5
length of query: 116
length of database: 7,911,228
effective HSP length: 84
effective length of query: 32
effective length of database: 7,908,624
effective search space: 253075968
effective search space used: 253075968
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)