TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    60   2e-09
gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   4.7  
gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   6.2  
gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   8.1  

>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
              sequence
          Length = 683011

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 67/308 (21%), Positives = 116/308 (37%), Gaps = 37/308 (12%)
 Frame = -2

Query: 123    VIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNXXXXXXXXXX 182
              ++P + GG ++VQT D+F  +V+DP+  G+I   + LSD++AMG T              
Sbjct: 128631 ILPNKAGG-AIVQTIDYFREIVKDPFTFGKIVAVHALSDIHAMGATP-QTAMTLAVAPFA 128458

Query: 183    XXXXXREKVTPLMVKGFRDXXXXXXXXXXXXXXXXNPWIIIG-GVATVVCQPNEFIMPDS 241
                    E     ++ G  D                   +  G  V      P   +    
Sbjct: 128457 ADEEVTESTLLHLLSGVSDILQDENVQLVGGHTCEGLELACGLSVQGYTDNPKLLLRKQG 128278

Query: 242    AVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAY-QEAMFNMATLNR 300
                +GD +VLTKP+GT     A                  R   + +Y  EA+ +M   N 
Sbjct: 128277 GAIGDKIVLTKPIGTGALFAADM----------------RARCKGSYMSEALDSMIHSNC 128146

Query: 301    TAAGL-MHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAV------ 353
               A+ + M      + TD+TGFG++GH   L     NE    + ++  +  +  +      
Sbjct: 128145 HASQVAMRAKGIRSCTDVTGFGLIGHL--LEMLMANETVKELDSIGAVVNIGDIDFLRGG 127972

Query: 354    --SKASGRFGLLQGTSA--------------------------ETSGGLLICLPREQAAR 385
                + A+G F  LQ  +                           +T+GGL+  +    A+ 
Sbjct: 127971 LEASANGIFSTLQSQNGRNRRAIVNHTEAAEKYPVKYPLLFDPQTAGGLMFFVDALSASE 127792

Query: 386    FCSEIKSS 393
              F +E++++
Sbjct: 127791 FLAELRAA 127768


>gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun
              sequence
          Length = 1035082

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 379    PREQAARFCSEIKSSKYGEGH-QAWIVGIVEKGNR 412
              PRE+ AR CS    S Y  G+ + W+  +V+ G+R
Sbjct: 354191 PRERGARHCSGHGVSLYERGYPKGWMCSLVQHGSR 354295


>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
               sequence
          Length = 2535400

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 70      LKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG 129
               ++L + +    V P   +G   G    +  +GLP    PSPTFP   +G DS   P+  G
Sbjct: 1316079 IRLASAIIGRIVSPVASKGCDSGIRP*ALGSGLPIIPCPSPTFPYTTVG-DSSKFPVGKG 1316255


>gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 4, whole genome
             shotgun sequence
          Length = 1360148

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -3

Query: 79    PDVRPP---LGRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGGLSLVQ 135
             PD   P    G   +   E A Q+ G   GAGP+    ALG     C++ + H G+++  
Sbjct: 70758 PDFMSPEAVKGTSSMAETEAARQDHGDVVGAGPAADLWALG-----CLLYILHTGMTVFW 70594

Query: 136   TT 137
             TT
Sbjct: 70593 TT 70588


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,873,608
Number of Sequences: 31
Number of extensions: 161669
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 69
length of query: 448
length of database: 7,911,228
effective HSP length: 101
effective length of query: 347
effective length of database: 7,908,097
effective search space: 2744109659
effective search space used: 2744109659
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)