TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Homo sapiens # Complete
         (392 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    82   4e-16
gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   5.2  
gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   6.8  
gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   8.9  

>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
              sequence
          Length = 683011

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 5/252 (1%)
 Frame = -2

Query: 28     GTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTCV--IPLRHGGLSLVQT 85
              G G KV   ++ ++L ++ E    E  + LG   P      D  V  +P + GG ++VQT
Sbjct: 128766 GCGAKVGATIVSRVLAAVYERQI-ERAKLLGLPQPSRIDHDDAAVQILPNKAGG-AIVQT 128593

Query: 86     TDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRE-RDKVMPLI 144
               DY   IV DP+  G+I   + LSD++AMG T      M L V+    D E  +  +  +
Sbjct: 128592 IDYFREIVKDPFTFGKIVAVHALSDIHAMGAT--PQTAMTLAVAPFAADEEVTESTLLHL 128419

Query: 145    IQGFKDAAEEAGTSVTGGQTVLNPWIVLG-GVATTVCQPNEFIMPDNAVPGDVLVLTKPL 203
              + G  D  ++    + GG T     +  G  V      P   +       GD +VLTKP+
Sbjct: 128418 LSGVSDILQDENVQLVGGHTCEGLELACGLSVQGYTDNPKLLLRKQGGAIGDKIVLTKPI 128239

Query: 204    GTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGL-MHTFNAHA 262
              GT    A          +                 EA+ +M   N  A+ + M      +
Sbjct: 128238 GTGALFAADMRARCKGSY---------------MSEALDSMIHSNCHASQVAMRAKGIRS 128104

Query: 263    ATDITGFGILGH 274
               TD+TGFG++GH
Sbjct: 128103 CTDVTGFGLIGH 128068


>gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 26, whole genome shotgun
              sequence
          Length = 441226

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 288    FVIHNLPVLAKMAAVSKACGNMFGLMHGTCP 318
              F + NLP L   A ++K+   + GL HG  P
Sbjct: 387057 FFLKNLPKLQHSACITKSVWRLVGLYHGVVP 387149


>gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 21, whole genome shotgun
              sequence
          Length = 662217

 Score = 28.5 bits (62), Expect = 6.8
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 70     TCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVS 129
              T +IP R G      +TD    +      +GR+ C N+L +++     E D+ L  LGV 
Sbjct: 105359 TIIIPTREG------STDTHIGVAFT--QLGRLCCDNILRNIHYRIHLELDSFLTCLGVG 105204

Query: 130    N 130
              N
Sbjct: 105203 N 105201


>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
              sequence
          Length = 2535400

 Score = 28.1 bits (61), Expect = 8.9
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 121    NMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVC 180
              N++ +LG      DR+   ++P+  +GF D+       VTG  T++  W+    V + VC
Sbjct: 240590 NVIFMLGA-----DRDEI*LLPVDCKGFLDSGSPNMKRVTGLSTLIILWVPAALVWSGVC 240426


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,770,872
Number of Sequences: 31
Number of extensions: 164721
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 105
length of query: 392
length of database: 7,911,228
effective HSP length: 100
effective length of query: 292
effective length of database: 7,908,128
effective search space: 2309173376
effective search space used: 2309173376
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)