TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Drosophila melanogaster # Complete (370 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 59 3e-09 gb|CM000630.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 3.7 gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 3.7 gb|CM000615.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 4.8 gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 6.3 gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 8.2 >gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun sequence Length = 683011 Score = 59.3 bits (142), Expect = 3e-09 Identities = 79/342 (23%), Positives = 136/342 (39%), Gaps = 40/342 (11%) Frame = -2 Query: 57 DCAVIPLKRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVS 116 D AV L ++QT+D+F +V DP G+I + LSD++A+G T + + V+ Sbjct: 128646 DAAVQILPNKAGGAIVQTIDYFREIVKDPFTFGKIVAVHALSDIHAMGATPQTAMTLAVA 128467 Query: 117 TSTSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEE 176 + E ++ L + G + L+ N L+ G + + Sbjct: 128466 PFAADEEVTESTLLHL-LSGVSDILQDE---NVQLVGGHTCEGLELACGLSVQGYTDNPK 128299 Query: 177 IILPSNAQP-GDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSECSDADIKETFEIAVK 235 ++L GD +VLTKP+G A + + C + + E A+ Sbjct: 128298 LLLRKQGGAIGDKIVLTKPIGTGALFAADM------------RARCKGSYMSE----ALD 128167 Query: 236 SMTYLNKNAA-LLMHKYQAHCATDITGFGLLGHA-------NNLAQFQKEKVLFQINKLP 287 SM + N +A+ + M TD+TGFGL+GH + + + I + Sbjct: 128166 SMIHSNCHASQVAMRAKGIRSCTDVTGFGLIGHLLEMLMANETVKELDSIGAVVNIGDID 127987 Query: 288 IIKNVLK------FSTLVGQSTKFRSGRSV--------------------ETSGGLLICL 321 ++ L+ FSTL QS R+ R++ +T+GGL+ + Sbjct: 127986 FLRGGLEASANGIFSTL--QSQNGRNRRAIVNHTEAAEKYPVKYPLLFDPQTAGGLMFFV 127813 Query: 322 PADAADKFCRDFEEA-----TNGEQKSFQIGHVTAANESDAV 358 A +A +F + A GE S+ AA S++V Sbjct: 127812 DALSASEFLAELRAADVNAHIVGELVSYPAESNAAAGFSESV 127687 >gb|CM000630.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 28, whole genome shotgun sequence Length = 387582 Score = 29.3 bits (64), Expect = 3.7 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 7/100 (7%) Frame = +1 Query: 104 GVTQFDTVEMI-VSTSTSFSEKERDVVIGLVMKGFQNSLKANG-YRNTPLII-----RQL 156 G ++ DTV + + T + E + + +G Q+S A+ + N P + ++L Sbjct: 286981 GSSRSDTVRLFSLETRRTVLINEDGFKVHVSYRGEQSSFDASWLWHNDPSYVHPSSGQRL 287160 Query: 157 KINPWCIIGGIATSVCRSEEIILPSNAQPGDVLVLTKPLG 196 + +PW +G S C E S A G V+ PLG Sbjct: 287161 RSSPWTGLGRAIESACIVTEKRAQSEASEGIVIPSAAPLG 287280 >gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun sequence Length = 976485 Score = 29.3 bits (64), Expect = 3.7 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +3 Query: 187 DVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSECSD 223 D LVLT+P+ + D + WQ + EK K+L SD Sbjct: 198729 DRLVLTEPIEKSIEGDRYTWQEAECEKLLKVLRHQSD 198839 >gb|CM000615.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 13, whole genome shotgun sequence Length = 887524 Score = 28.9 bits (63), Expect = 4.8 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 15 LTKFTTHTGUSCKIPQKVLEKYLRGTEIENKNNDGYLIGSGMDCAVI 61 LT+F T C P K++ + I ++NN +I G DCA I Sbjct: 839804 LTRFDT---IICVGPTHRFSKFMTTSTIRSRNNGKRVISEGSDCAAI 839673 >gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 21, whole genome shotgun sequence Length = 662217 Score = 28.5 bits (62), Expect = 6.3 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 10/81 (12%) Frame = -1 Query: 42 IENKNNDGYLIGSGMDCAVIPLKRHKDYLLI----------QTVDFFYPMVNDPELLGRI 91 I+ KNN+ + + S C +IPL+ D L+ V + + +ND E +G Sbjct: 635034 IDLKNNNCFQLPSARQCTMIPLQGGVDPSLLIVPSTSVNSCAAVGYTFCFLNDHEKIGTH 634855 Query: 92 ALANVLSDVYAVGVTQFDTVE 112 ++SD G Q +E Sbjct: 634854 VWDFLISDGNTKGPVQIGALE 634792 >gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 19, whole genome shotgun sequence Length = 690427 Score = 28.1 bits (61), Expect = 8.2 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 14/44 (31%) Frame = -1 Query: 163 IIGGIATSVCRSE--------------EIILPSNAQPGDVLVLT 192 ++ G+A+ VC E E+ILPS+A+ GD+L LT Sbjct: 430756 VVRGLASFVCVVECGGLGDLAFFADHPELILPSSARKGDILCLT 430625 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,113,174 Number of Sequences: 31 Number of extensions: 125475 Number of successful extensions: 542 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 518 Number of HSP's gapped (non-prelim): 80 length of query: 370 length of database: 7,911,228 effective HSP length: 100 effective length of query: 270 effective length of database: 7,908,128 effective search space: 2135194560 effective search space used: 2135194560 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)