TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000047_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Drosophila melanogaster # Complete
         (398 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    81   9e-16
gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   3.1  
gb|CM000631.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   5.3  

>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
              sequence
          Length = 683011

 Score = 81.3 bits (199), Expect = 9e-16
 Identities = 74/254 (29%), Positives = 115/254 (45%), Gaps = 5/254 (1%)
 Frame = -2

Query: 48     GRGCKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRIGIGLDCSV--IPLRHGGLCLV 105
              G G KV   ++S++++A+   Y  Q +  + L +  P      D +V  +P + GG  +V
Sbjct: 128766 GCGAKVGATIVSRVLAAV---YERQIERAKLLGLPQPSRIDHDDAAVQILPNKAGG-AIV 128599

Query: 106    QTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNMLMLLAVSTKMTEKE-RDVVIP 164
              QT D+F  IV DP+  GKI   + LSD++AMG T      M LAV+    ++E  +  + 
Sbjct: 128598 QTIDYFREIVKDPFTFGKIVAVHALSDIHAMGAT--PQTAMTLAVAPFAADEEVTESTLL 128425

Query: 165    LIMRGFKDSALEAGTTVTGGQSVVNPWCTIG-GVASTICQPNEYIVPDNAVVGDVLVLTK 223
               ++ G  D   +    + GG +        G  V      P   +      +GD +VLTK
Sbjct: 128424 HLLSGVSDILQDENVQLVGGHTCEGLELACGLSVQGYTDNPKLLLRKQGGAIGDKIVLTK 128245

Query: 224    PLGTQVAVNAHQWIDQPERWNRIKLVVSEEDVRKAYHRAMNSMARLNRVAARL-MHKYNA 282
              P+GT     A       +   R K     E        A++SM   N  A+++ M     
Sbjct: 128244 PIGTGALFAA-------DMRARCKGSYMSE--------ALDSMIHSNCHASQVAMRAKGI 128110

Query: 283    HGATDITGFGLLGH 296
                 TD+TGFGL+GH
Sbjct: 128109 RSCTDVTGFGLIGH 128068


>gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 4, whole genome shotgun
              sequence
          Length = 1360148

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = +3

Query: 167    MRGFKDSALEA----GTTVTGGQSVVNPWCTIG--GVASTICQPNEYIVPDNAVVGDVLV 220
              M G +++A  A    GTT  G  +  NPW + G  G AS++ QP     PD A +  + +
Sbjct: 235848 MGGNRNAASSANNNTGTTAHGTAATGNPWASTGMPGFASSLQQPPS---PDQANL-MMNL 236015

Query: 221    LTKPLGTQVAVNA 233
              L  P  TQ+  NA
Sbjct: 236016 LDNPAVTQMMQNA 236054


>gb|CM000631.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 29, whole genome shotgun
              sequence
          Length = 384256

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
 Frame = +1

Query: 292    GLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLP 351
              GLLGH     A   K +S +  NL  +++     +   N+ QL + H      G      
Sbjct: 195001 GLLGHGSYELATMDKLISHIWKNLQTLSQ----DETMWNLVQLFRRH---MDAGTFQPEA 195159

Query: 352    REQAAAYCKDIEKQEGYQ-------------AWIIGIVEKGNKTARIIDKPRVIE 393
                Q AAY  D E+   +Q             A  +G+++ GN+    + +  V+E
Sbjct: 195160 FRQEAAYLSDGEQMYAFQYCPVQGKDDAVLYAEYLGVIDDGNEGGAAMVEDAVLE 195324


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,958,420
Number of Sequences: 31
Number of extensions: 165500
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 36
length of query: 398
length of database: 7,911,228
effective HSP length: 100
effective length of query: 298
effective length of database: 7,908,128
effective search space: 2356622144
effective search space used: 2356622144
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)