TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Anopheles gambiae # Complete (369 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 84 1e-16 gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 31 1.3 gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 30 1.6 gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 3.7 gb|CM000634.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 6.3 gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 6.3 gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 8.2 >gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun sequence Length = 683011 Score = 84.0 bits (206), Expect = 1e-16 Identities = 78/282 (27%), Positives = 131/282 (46%), Gaps = 6/282 (2%) Frame = -2 Query: 23 GUGSKVPQDVLNRLLAGVYGEQLGDKDGKGPNKEEGVGIGLDSSVIAL---KHDLFLVQS 79 G G+KV +++R+LA VY Q+ + K + I D + + + K +VQ+ Sbjct: 128766 GCGAKVGATIVSRVLAAVYERQI--ERAKLLGLPQPSRIDHDDAAVQILPNKAGGAIVQT 128593 Query: 80 VDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQIKLIVTAPTEFTEQEREVVVPMVM 139 +D+F ++ DPF GKI + +SD+ A+GAT + L V AP E+ E + ++ Sbjct: 128592 IDYFREIVKDPFTFGKIVAVHALSDIHAMGATPQTAMTLAV-APFAADEEVTESTLLHLL 128416 Query: 140 QGFLEAAKACNAPVQIGSIAENPWCVIGGAASAVCHRSELIM-PYNAQPGDALVLTKPLG 198 G + + N + G E G + +L++ GD +VLTKP+G Sbjct: 128415 SGVSDILQDENVQLVGGHTCEGLELACGLSVQGYTDNPKLLLRKQGGAIGDKIVLTKPIG 128236 Query: 199 TQLATNAYIWMGEQQSDSWAQLRERFTVADIEQTYRIALESMSRLNKTGAEL-MKKYGAH 257 T A +R R + + + AL+SM N +++ M+ G Sbjct: 128235 TGALFA-------------ADMRARCKGSYMSE----ALDSMIHSNCHASQVAMRAKGIR 128107 Query: 258 AATDVTGFGLYGH-AENLASHQTADVDFHLDTLPIIKNVREI 298 + TDVTGFGL GH E L +++T LD++ + N+ +I Sbjct: 128106 SCTDVTGFGLIGHLLEMLMANETVK---ELDSIGAVVNIGDI 127990 >gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 27, whole genome shotgun sequence Length = 404298 Score = 30.8 bits (68), Expect = 1.3 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = +3 Query: 88 DDPFMLGKIALANVVSDVFAVGATEIDQIKLIVTAPTEFTEQEREVVVPMVMQGFLEAAK 147 +D ++G++A A VV+ FA E+ + A + + V + + + A Sbjct: 105774 EDVAIVGRLASAVVVAAAFAGAPVEVSSASVESVALASASVES--VALALSAEAVASAEA 105947 Query: 148 ACNAPVQIGSIAENPWCVIGGAASA 172 A APV +G+ A P GAA++ Sbjct: 105948 AAGAPVPVGAAAFAPAFAATGAAAS 106022 >gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun sequence Length = 2535400 Score = 30.4 bits (67), Expect = 1.6 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 210 GEQQSDSWAQLRERFTVADIEQTYRIALESMSRLNKTGAELMKKYGAHAATD 261 GE+Q+ LR + T + E + +L K GAE+ ++YG AAT+ Sbjct: 1675850 GEEQASKQPTLRPKATSRSKSEN-----EMVDKLRKQGAEMREEYGDRAATE 1675990 >gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 2, whole genome shotgun sequence Length = 1497954 Score = 29.3 bits (64), Expect = 3.7 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +3 Query: 170 ASAVCHRSELIMPYNAQPGDALVLTKPLGTQLATNAYIWMGEQQSDSWAQLRERFTVAD 228 A A+CH + ++ GD L+ TQLA A I + ++ A + RF + D Sbjct: 182217 AQALCHEASTVLGLARSWGDGSYLSPSAATQLAETAQILLISVETTVQAVVDARFRLRD 182393 >gb|CM000634.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 32, whole genome shotgun sequence Length = 157053 Score = 28.5 bits (62), Expect = 6.3 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -2 Query: 157 SIAENPWCVIGGAASAVCHRSELIMPYNAQPGDALVLTKPLGTQ 200 S+AE PW + AA + CH ++ + P ++ L KP G+Q Sbjct: 45926 SMAEQPWRMF*RAAESRCHNAQRVGPDHSAIFFPLADYKPHGSQ 45795 >gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun sequence Length = 829358 Score = 28.5 bits (62), Expect = 6.3 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = -1 Query: 211 EQQSDSWAQLRERFTVADIEQTYRIALESMSRLNKTGAELMKKYGAHAATDVTG 264 EQ + WA L E +ADI ++ A E + KK G + DV G Sbjct: 647129 EQLVEDWAHLYELSKMADIFNSFDNAYEECGETTEQPTTTKKKSGKISLVDVIG 646968 >gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 12, whole genome shotgun sequence Length = 901853 Score = 28.1 bits (61), Expect = 8.2 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = -2 Query: 87 IDDPFMLGKIALANVVSDVFAVGATEID-QIKLIVTAPTEFTEQEREVVVPMVMQGFL 143 + +PF+L +A ++G E D QIK AP E++ V+P V Q L Sbjct: 687859 VPNPFLLSSQPIARCPMVAASLGGKENDDQIKETRKAPVRLLEKDDRFVIPGVSQSVL 687686 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.319 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,334,368 Number of Sequences: 31 Number of extensions: 132382 Number of successful extensions: 722 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 685 Number of HSP's gapped (non-prelim): 97 length of query: 369 length of database: 7,911,228 effective HSP length: 100 effective length of query: 269 effective length of database: 7,908,128 effective search space: 2127286432 effective search space used: 2127286432 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)