TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000055_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Anopheles gambiae # Complete
         (396 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    75   8e-14
gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   6.9  

>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
              sequence
          Length = 683011

 Score = 74.7 bits (182), Expect = 8e-14
 Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 3/206 (1%)
 Frame = -2

Query: 92     VIPLRHGGLCMVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTEVDNMLMLLAVSTK 151
              ++P + GG  +VQT D+F  IV DP+  GKI   + LSD++AMG T      M LAV+  
Sbjct: 128631 ILPNKAGG-AIVQTIDYFREIVKDPFTFGKIVAVHALSDIHAMGAT--PQTAMTLAVAPF 128461

Query: 152    MIEKE-RDVVIPLIMRGFKDSALEAGTSVTGGHSVVNPWCTIGGVATTICQQNEFIV-PD 209
                ++E  +  +  ++ G  D   +    + GGH+        G          + ++   
Sbjct: 128460 AADEEVTESTLLHLLSGVSDILQDENVQLVGGHTCEGLELACGLSVQGYTDNPKLLLRKQ 128281

Query: 210    NAVVGDVLVLTKALGTQVAVNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNR 269
                 +GD +VLTK +GT         L  ++   R K     E        A+DSM   N 
Sbjct: 128280 GGAIGDKIVLTKPIGTGA-------LFAADMRARCKGSYMSE--------ALDSMIHSNC 128146

Query: 270    VAARL-MHKYNAHGATDVTGFGLLGH 294
               A+++ M        TDVTGFGL+GH
Sbjct: 128145 HASQVAMRAKGIRSCTDVTGFGLIGH 128068


>gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 18, whole genome shotgun
              sequence
          Length = 702471

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 24     RPFDPTAHDLDASFRLTRFADLKGRCCKVPKEVLEKLVSSLQQD 67
              RP   T  +LD  FR+ R      R   VPK  + KLVS+ Q+D
Sbjct: 145806 RPETATVDNLDVGFRVER------RITIVPKTWIVKLVSNAQKD 145919


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,122,205
Number of Sequences: 31
Number of extensions: 167895
Number of successful extensions: 771
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 18
length of query: 396
length of database: 7,911,228
effective HSP length: 100
effective length of query: 296
effective length of database: 7,908,128
effective search space: 2340805888
effective search space used: 2340805888
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)