TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic s...    30   0.21 
gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   1.4  
gb|GL290992.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   2.4  
gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic s...    25   8.9  

>gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig8,
              whole genome shotgun sequence
          Length = 1319729

 Score = 30.4 bits (67), Expect = 0.21
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 3      YISNGQVLDSRNQSPWRVSFLTDFFWGIAEFVVF 36
              Y+ +G+V    N   WR+S ++D+FW     +VF
Sbjct: 948942 YLEDGRVAQKTN---WRLSIISDYFWYFLNQIVF 949034


>gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3,
              whole genome shotgun sequence
          Length = 2290287

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 2      VYISNGQVL-----DSRNQSPWRVSFLTDFFWGIAEFVVFFFKTLL 42
              VY SN Q++     D +NQ  +    L  FFW    F++ FF  +L
Sbjct: 102216 VYHSNKQLVSVC*SDEKNQITFYKKILLKFFWIFFLFLISFFSQVL 102353


>gb|GL290992.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold10,
              whole genome shotgun sequence
          Length = 1641145

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 5      SNGQVLDSRNQSPWRVSFLTDFFWGIAEFVVFFF 38
              +N   +++ N +   + FL D+ + +  F+VFFF
Sbjct: 785246 NNNNSVNNNNNNEGMLCFLIDYIFNLFIFIVFFF 785145


>gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold11,
               whole genome shotgun sequence
          Length = 1505626

 Score = 25.0 bits (53), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 18      WRVSFLTDFFWGIAEFVVFFFKTLLQQDV 46
               WR +F  +   G+   VV FF   LQQ+V
Sbjct: 1197659 WRWAFWINIPIGVIALVVVFFALKLQQEV 1197745


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.332    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,426,983
Number of Sequences: 42
Number of extensions: 28491
Number of successful extensions: 320
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 27
length of query: 94
length of database: 10,980,844
effective HSP length: 69
effective length of query: 25
effective length of database: 10,977,946
effective search space: 274448650
effective search space used: 274448650
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (25.0 bits)