TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   0.62 
gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   1.1  
gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   1.8  
gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   2.4  
gb|GL291020.1| Polysphondylium pallidum PN500 unplaced genomic s...    26   4.0  

>gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig8,
              whole genome shotgun sequence
          Length = 1319729

 Score = 28.9 bits (63), Expect = 0.62
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 3      YISNGQVLDSRSQSPWRLSLITDFFW 28
              Y+ +G+V    +   WRLS+I+D+FW
Sbjct: 948942 YLEDGRVAQKTN---WRLSIISDYFW 949010


>gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold9,
              whole genome shotgun sequence
          Length = 2264991

 Score = 28.1 bits (61), Expect = 1.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 39     KTLLQQDVKKRRSYGNSSDSRYD 61
              K+L+   VK+RR YG++ + RYD
Sbjct: 793389 KSLIDWHVKQRRYYGHTENGRYD 793457


>gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold11,
              whole genome shotgun sequence
          Length = 1505626

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 10     LDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRS 51
              L    Q P  L  I   FWGI+  + LFF  + Q  +K +++
Sbjct: 712082 LIKNKQIP*ILKNIYTIFWGISIVLNLFFLFIFQSGIKSKKT 711957


>gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold12,
              whole genome shotgun sequence
          Length = 1032189

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 3      YISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQ 43
              YIS G  L +   S   L L+  +++ I  FVVLF   LLQ
Sbjct: 926058 YISKGIKLSNYCDSIISLFLLYYYYYYITLFVVLFLFVLLQ 926180


>gb|GL291020.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig23,
             whole genome shotgun sequence
          Length = 310237

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 26    FFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYD 61
             FFW      + F   L+   + K RSY N  D+R D
Sbjct: 32547 FFWFFFFLFLFFLNYLIGIIITKNRSY*NCFDTRID 32654


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,800,356
Number of Sequences: 42
Number of extensions: 33369
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 22
length of query: 94
length of database: 10,980,844
effective HSP length: 69
effective length of query: 25
effective length of database: 10,977,946
effective search space: 274448650
effective search space used: 274448650
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)