TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   0.47 
gb|GL291023.1| Polysphondylium pallidum PN500 unplaced genomic s...    26   4.0  
gb|GL291020.1| Polysphondylium pallidum PN500 unplaced genomic s...    25   6.8  
gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s...    25   6.8  
gb|GL290989.1| Polysphondylium pallidum PN500 unplaced genomic s...    25   8.9  
gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic s...    25   8.9  

>gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig15,
              whole genome shotgun sequence
          Length = 727357

 Score = 29.3 bits (64), Expect = 0.47
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 19     RRIVELFVGIWFAIKQLFLTFLAPFTGNNN 48
              ++I+E+F    F I QL++++   +  NNN
Sbjct: 287433 QKIIEIFFSFLFHINQLYMSYYKKYNNNNN 287344


>gb|GL291023.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig26,
              whole genome shotgun sequence
          Length = 801170

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 21     IVELFVGIWFAIKQLFLTF 39
              +VE FVG WF + +LF+ +
Sbjct: 555571 VVEHFVGHWFEVMELFVNY 555515


>gb|GL291020.1| Polysphondylium pallidum PN500 unplaced genomic scaffold
            PPL_contig23, whole genome shotgun sequence
          Length = 310237

 Score = 25.4 bits (54), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 28   IWFAIKQLFLTFLAPFTGNNNQ 49
            IW + KQ+F TFL  F G+ N+
Sbjct: 3149 IW*SYKQIFKTFLNSFGGSLNK 3214


>gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3,
               whole genome shotgun sequence
          Length = 2290287

 Score = 25.4 bits (54), Expect = 6.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 11      WEKRPWDWRRIVELFVGIWFAIKQLF 36
               W  R + W  I    VGIWF    LF
Sbjct: 1167763 WRWR*YHWLAIESGGVGIWFTFSNLF 1167840


>gb|GL290989.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold7,
             whole genome shotgun sequence
          Length = 428971

 Score = 25.0 bits (53), Expect = 8.9
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 5     DHNGRV-WEKRPWDWRRIVELFVG 27
             +H G   W++RP+D R I+ LF G
Sbjct: 36124 EHEGSTCWKERPYDPRPIIILFEG 36195


>gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold1,
               whole genome shotgun sequence
          Length = 1995969

 Score = 25.0 bits (53), Expect = 8.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 16      WDWRRIVELFVG 27
               W WRR V LF+G
Sbjct: 1128581 WSWRRFVHLFLG 1128616


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.328    0.144    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,334,442
Number of Sequences: 42
Number of extensions: 31071
Number of successful extensions: 256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 24
length of query: 110
length of database: 10,980,844
effective HSP length: 85
effective length of query: 25
effective length of database: 10,977,274
effective search space: 274431850
effective search space used: 274431850
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)