TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[translate(1)] (89 letters) Database: P.pallidum/genome.fa 42 sequences; 32,942,533 total letters Searching..........................................done Score E Sequences producing significant alignments: (bits) Value gb|GL291011.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 0.21 gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s... 29 0.62 gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic s... 26 4.0 gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic s... 26 4.0 gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic s... 26 5.2 gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic s... 26 5.2 gb|GL290989.1| Polysphondylium pallidum PN500 unplaced genomic s... 25 6.8 gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic s... 25 8.9 gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic s... 25 8.9 >gb|GL291011.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig14, whole genome shotgun sequence Length = 274014 Score = 30.4 bits (67), Expect = 0.21 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 47 EYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSLTGG 83 EY+++ I F VGH P GP+ P S+ GG Sbjct: 217294 EYQNSIPIPNFQNRFPVGHTPNGPHSFNAPSNSVGGG 217404 >gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3, whole genome shotgun sequence Length = 2290287 Score = 28.9 bits (63), Expect = 0.62 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = -2 Query: 10 VDSKPFSLVDFFLSILRLMWLFFATLVSS 38 VDSK F L FFLS++RL+ F L+ S Sbjct: 1720928 VDSKSFQLSIFFLSLIRLLSNLFLLLLFS 1720842 >gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig8, whole genome shotgun sequence Length = 1319729 Score = 26.2 bits (56), Expect = 4.0 Identities = 8/24 (33%), Positives = 19/24 (79%) Frame = -1 Query: 22 LSILRLMWLFFATLVSSEPVSQHV 45 L++++++W F ATL + +PV +++ Sbjct: 651374 LALVKVLWGFLATLFTGDPVLKYI 651303 Score = 25.8 bits (55), Expect = 5.2 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 22 LSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGG 60 L LRL+WLF TL P++ T+ ++P G Sbjct: 752500 LKFLRLIWLFKQTLTIGNPITSE----EITSGVLPIENG 752604 Score = 25.4 bits (54), Expect = 6.8 Identities = 8/29 (27%), Positives = 19/29 (65%) Frame = +3 Query: 22 LSILRLMWLFFATLVSSEPVSQHVQEYRS 50 L++++++W F A+L + +PV ++ S Sbjct: 630780 LALVKVLWSFLASLFTGDPVINYINSVDS 630866 >gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold9, whole genome shotgun sequence Length = 2264991 Score = 26.2 bits (56), Expect = 4.0 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Frame = +2 Query: 48 YRSTTRIVPFGGGRSVGHA-----PRGPNIHGLPKGSL 80 Y ++PF GG+++ HA P +H PK ++ Sbjct: 1456904 YGKIRSLIPFNGGQTIQHAAST*LQTSPALHPYPKNNI 1457017 >gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig12, whole genome shotgun sequence Length = 1458135 Score = 25.8 bits (55), Expect = 5.2 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 15 FSLVDFFL---SILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGG 59 F+ +DFF+ SI+ L + FF + ++ H++ +++ RI GG Sbjct: 507299 FAYLDFFIVSASIIFLFFFFFG-VFQTKKTDNHIKTFQARMRIELVGG 507439 >gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold14, whole genome shotgun sequence Length = 1054919 Score = 25.8 bits (55), Expect = 5.2 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 10 VDSKPFSLVDFFLSILRLMWLFFATL 35 +D+K F L FF+S L WL + + Sbjct: 109390 LDTKVFCLASFFISFLARCWLILSLI 109313 >gb|GL290989.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold7, whole genome shotgun sequence Length = 428971 Score = 25.4 bits (54), Expect = 6.8 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -1 Query: 15 FSLVDFFLSILRLMWLFFATL 35 F ++ ++IL L+W+FF TL Sbjct: 30025 FHIL*ILIAILNLLWIFFLTL 29963 Score = 25.0 bits (53), Expect = 8.9 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -3 Query: 15 FSLVDFFLSILRLMWLFF 32 F L+ FL +L LMWLFF Sbjct: 140480 FMLILSFLFLLFLMWLFF 140427 >gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig1, whole genome shotgun sequence Length = 1301413 Score = 25.0 bits (53), Expect = 8.9 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -1 Query: 34 TLVSS--EPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKG 78 T+VS+ EP VQ +R T P+GG G++ G G P G Sbjct: 131356 TVVSNPNEPDYSVVQYHRGNTNRNPYGGNPFGGNSNGGIGFGGNPYG 131216 >gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold2, whole genome shotgun sequence Length = 3242543 Score = 25.0 bits (53), Expect = 8.9 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +2 Query: 18 VDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPF 57 +D L I+ L+ LFF TLV+S+ + H Q + + +++ F Sbjct: 2187350 LDIDLMII-LLTLFFPTLVTSQLIQFHHQLFSISRKLLVF 2187466 Database: P.pallidum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 32,942,533 Number of sequences in database: 42 Lambda K H 0.323 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,042,129 Number of Sequences: 42 Number of extensions: 36688 Number of successful extensions: 224 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 203 Number of HSP's gapped (non-prelim): 57 length of query: 89 length of database: 10,980,844 effective HSP length: 64 effective length of query: 25 effective length of database: 10,978,156 effective search space: 274453900 effective search space used: 274453900 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (25.0 bits)