TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL291010.1| Polysphondylium pallidum PN500 unplaced genomic s...    26   4.8  
gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic s...    26   4.8  
gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic s...    26   4.8  
gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic s...    26   4.8  
gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic s...    26   4.8  
gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic s...    25   8.2  
gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic s...    25   8.2  

>gb|GL291010.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig13,
              whole genome shotgun sequence
          Length = 836226

 Score = 26.2 bits (56), Expect = 4.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 3      DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFIL 39
              D+++NKK    +   +D+K++Y+K  K+     K+++
Sbjct: 641617 DKQQNKKQDKKQDKKQDKKIQYKKQNKKQKNKTKYLV 641727


>gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig6,
            whole genome shotgun sequence
          Length = 254162

 Score = 26.2 bits (56), Expect = 4.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -2

Query: 3    DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFIL 39
            D+++NKK    +   +D+K++Y+K  K+     K+++
Sbjct: 7093 DKQQNKKQDKKQDKKQDKKIQYKKQNKKQKNKTKYLV 6983


>gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig1,
              whole genome shotgun sequence
          Length = 1301413

 Score = 26.2 bits (56), Expect = 4.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -3

Query: 3      DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFIL 39
              D+++NKK    +   +D+K++Y+K  K+     K+++
Sbjct: 462467 DKQQNKKQDKKQDKKQDKKIQYKKQNKKQKNKTKYLV 462357


>gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold8,
               whole genome shotgun sequence
          Length = 2270872

 Score = 26.2 bits (56), Expect = 4.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 3       DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFIL 39
               D+++NKK    +   +D+K++Y+K  K+     K+++
Sbjct: 1235611 DKQQNKKQDKKQDKKQDKKIQYKKQNKKQKNKTKYLV 1235721


>gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold6,
               whole genome shotgun sequence
          Length = 2018088

 Score = 26.2 bits (56), Expect = 4.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -2

Query: 3       DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFIL 39
               D+++NKK    +   +D+K++Y+K  K+     K+++
Sbjct: 1585058 DKQQNKKQDKKQDKKQDKKIQYKKQNKKQKNKTKYLV 1584948


>gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig12,
              whole genome shotgun sequence
          Length = 1458135

 Score = 25.4 bits (54), Expect = 8.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 12     DYEIFLRDRKLKYEKIRKRNALHNKFI 38
              DY++ ++D  +  E++R  N LHN  I
Sbjct: 943785 DYDVSIQDYNILCEEMRSINKLHNNRI 943705


>gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold11,
               whole genome shotgun sequence
          Length = 1505626

 Score = 25.4 bits (54), Expect = 8.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 3       DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNK 36
               D+++NKK    +   +D+K++Y+K  K+    NK
Sbjct: 1043659 DKQQNKKQDKKQDKKQDKKIQYKKQNKKQKK*NK 1043760


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,723,010
Number of Sequences: 42
Number of extensions: 25007
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 24
length of query: 116
length of database: 10,980,844
effective HSP length: 86
effective length of query: 30
effective length of database: 10,977,232
effective search space: 329316960
effective search space used: 329316960
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)