TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s...   249   3e-66

>gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13,
              whole genome shotgun sequence
          Length = 1052162

 Score =  249 bits (636), Expect = 3e-66
 Identities = 135/295 (45%), Positives = 172/295 (58%), Gaps = 6/295 (2%)
 Frame = +2

Query: 139    FFYPLVEDPYMMGRIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKG 198
              FF+P V+DPY+MG+IACANVLSDLY+ GI ECDN               R   T  +++G
Sbjct: 555905 FFFPNVDDPYLMGKIACANVLSDLYSFGIDECDNMLMLLAASTDMTPENRNWSTRGLIQG 556084

Query: 199    FRDXXXXXXXXXXXXXXXXNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQV 258
              F D                NPW +IGGVAT + + +E IMP +AV GDVLVLTKPLGTQV
Sbjct: 556085 FNDHCNLAGTKVRGGQTVKNPWPLIGGVATAIIRKDEMIMPVNAVPGDVLVLTKPLGTQV 556264

Query: 259    AVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDIT 318
                N HQW+  PE+W K+  + + EE    +  A  +MA LNR  A LM  + AHAATD+T
Sbjct: 556265 CANFHQWIRQPEKWAKIADIATVEEAVETFTYATQSMARLNRIGARLMRKYGAHAATDVT 556444

Query: 319    GFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVS-KASGRFGLLQGTSAETSGGLLIC 377
              GFGI GHS NLAK Q   V F IH LPII  M  +    +  + L +G SAETSGGLLI 
Sbjct: 556445 GFGIAGHSDNLAKSQLQPVVFEIHTLPIIEHMKKIDVHLNNNWNLCRGLSAETSGGLLIA 556624

Query: 378    LPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTAR-----IIDKPRVIEVLP 427
              +P ++A  F  EI+     E   AWI+G V   ++        +ID P ++E+ P
Sbjct: 556625 MPEDKAREFVKEIEEI---EHQPAWIIGRVLASDKPVTENRSVVIDNPTILEIKP 556780



 Score = 36.2 bits (82), Expect = 0.053
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 50     RLTGFSGMKGUGCKVPQEALLKLLAGL 76
              RLT ++ +KG GCK+PQ+ LL LL G+
Sbjct: 555672 RLTDYTKLKG*GCKIPQKELLSLLEGI 555752


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,563,425
Number of Sequences: 42
Number of extensions: 134614
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 9
length of query: 448
length of database: 10,980,844
effective HSP length: 104
effective length of query: 344
effective length of database: 10,976,476
effective search space: 3775907744
effective search space used: 3775907744
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)