TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Homo sapiens # Complete
         (392 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s...   291   1e-85

>gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13,
              whole genome shotgun sequence
          Length = 1052162

 Score =  291 bits (745), Expect(2) = 1e-85
 Identities = 155/303 (51%), Positives = 189/303 (62%), Gaps = 5/303 (1%)
 Frame = +2

Query: 88     YIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQG 147
              + +P VDDPY+MG+IACANVLSDLY+ G+ ECDNMLMLL  S  MT   R+     +IQG
Sbjct: 555905 FFFPNVDDPYLMGKIACANVLSDLYSFGIDECDNMLMLLAASTDMTPENRNWSTRGLIQG 556084

Query: 148    FKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQV 207
              F D    AGT V GGQTV NPW ++GGVAT + + +E IMP NAVPGDVLVLTKPLGTQV
Sbjct: 556085 FNDHCNLAGTKVRGGQTVKNPWPLIGGVATAIIRKDEMIMPVNAVPGDVLVLTKPLGTQV 556264

Query: 208    AVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDIT 267
                  HQW+  PEKW KI  + T E+    +  A  +MARLNR  A LM  + AHAATD+T
Sbjct: 556265 CANFHQWIRQPEKWAKIADIATVEEAVETFTYATQSMARLNRIGARLMRKYGAHAATDVT 556444

Query: 268    GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLIC 327
              GFGI GH+ NLAK Q   V F IH LP++  M  +     N + L  G   ETSGGLLI 
Sbjct: 556445 GFGIAGHSDNLAKSQLQPVVFEIHTLPIIEHMKKIDVHLNNNWNLCRGLSAETSGGLLIA 556624

Query: 328    LPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTAR-----IIDKPRIIEVAPQVATQ 382
              +P ++A  F  EI+     E   AWIIG V   ++        +ID P I+E+ P    Q
Sbjct: 556625 MPEDKAREFVKEIEEI---EHQPAWIIGRVLASDKPVTENRSVVIDNPTILEIKP---NQ 556786

Query: 383    NVN 385
              N N
Sbjct: 556787 NFN 556795



 Score = 44.7 bits (104), Expect(2) = 1e-85
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = +3

Query: 19     RLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTCVIPLRHG 78
              RLT +T+LKG GCK+PQ  L  LLE + +                 GIG D  ++P +  
Sbjct: 555672 RLTDYTKLKG*GCKIPQKELLSLLEGIGD-----------------GIGYDCAIVPTKFP 555800

Query: 79     GLSLVQTTD 87
               + +V TTD
Sbjct: 555801 DIVMVTTTD 555827


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,864,809
Number of Sequences: 42
Number of extensions: 151745
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 6
length of query: 392
length of database: 10,980,844
effective HSP length: 102
effective length of query: 290
effective length of database: 10,976,560
effective search space: 3183202400
effective search space used: 3183202400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)