TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s...   219   1e-61
gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic s...    30   3.9  

>gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13,
              whole genome shotgun sequence
          Length = 1052162

 Score =  219 bits (558), Expect(2) = 1e-61
 Identities = 121/296 (40%), Positives = 187/296 (63%), Gaps = 4/296 (1%)
 Frame = +2

Query: 77     FFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVSTSTSFSEKERDVVIGLVMKG 136
              FF+P V+DP L+G+IA ANVLSD+Y+ G+ + D + M+++ ST  + + R+     +++G
Sbjct: 555905 FFFPNVDDPYLMGKIACANVLSDLYSFGIDECDNMLMLLAASTDMTPENRNWSTRGLIQG 556084

Query: 137    FQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEEIILPSNAQPGDVLVLTKPLG 196
              F +     G   T +   Q   NPW +IGG+AT++ R +E+I+P NA PGDVLVLTKPLG
Sbjct: 556085 FNDHCNLAG---TKVRGGQTVKNPWPLIGGVATAIIRKDEMIMPVNAVPGDVLVLTKPLG 556255

Query: 197    GQMAMDAHLWQLNQTEKYKKLLSECSDADIKETFEIAVKSMTYLNKNAALLMHKYQAHCA 256
               Q+  + H W + Q EK+ K+    +  +  ETF  A +SM  LN+  A LM KY AH A
Sbjct: 556256 TQVCANFHQW-IRQPEKWAKIADIATVEEAVETFTYATQSMARLNRIGARLMRKYGAHAA 556432

Query: 257    TDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLVGQSTKFRSGRSVETSGG 316
              TD+TGFG+ GH++NLA+ Q + V+F+I+ LPII+++ K    +  +     G S ETSGG
Sbjct: 556433 TDVTGFGIAGHSDNLAKSQLQPVVFEIHTLPIIEHMKKIDVHLNNNWNLCRGLSAETSGG 556612

Query: 317    LLICLPADAADKFCRDFEEATNGEQKSFQIGHVTAAN----ESDAVLCEDVEFIEV 368
              LLI +P D A +F ++ EE  +  Q ++ IG V A++    E+ +V+ ++   +E+
Sbjct: 556613 LLIAMPEDKAREFVKEIEEIEH--QPAWIIGRVLASDKPVTENRSVVIDNPTILEI 556774



 Score = 36.6 bits (83), Expect(2) = 1e-61
 Identities = 24/63 (38%), Positives = 31/63 (49%)
 Frame = +3

Query: 14     QLTKFTTHTGUSCKIPQKVLEKYLRGTEIENKNNDGYLIGSGMDCAVIPLKRHKDYLLIQ 73
              +LT +T   G  CKIPQK L   L G        DG     G DCA++P K   D +++ 
Sbjct: 555672 RLTDYTKLKG*GCKIPQKELLSLLEGI------GDGI----GYDCAIVPTK-FPDIVMVT 555818

Query: 74     TVD 76
              T D
Sbjct: 555819 TTD 555827


>gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig9, whole
               genome shotgun sequence
          Length = 1029409

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
 Frame = +3

Query: 17      KFTTHTGUSCKIPQKVLEKYLRGTEIENKNNDGYLIGSGMDCAVIPLKRHKDYLLIQTVD 76
               K+TTH     + P+    + ++G   + KN   +   +  +  V   K+     LI+   
Sbjct: 1018791 KYTTHQTQLTEAPRGY--QSVQGVASDGKNGSVF---NDDEIVVFDAKQQVIKYLIE--- 1018946

Query: 77      FFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVSTSTSFS-EKERDVVIGLVMK 135
                F P+V+ PE   +     V +      V   DTV + +  S+  S E++  V  GL+  
Sbjct: 1018947 -FQPLVSQPEAKLKNLALQVNTTAPKASVIDNDTVPVSIPPSSQPSKEEDEPVESGLISS 1019123

Query: 136     GFQNSLKA 143
               G +  LKA
Sbjct: 1019124 GVKVPLKA 1019147


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,255,530
Number of Sequences: 42
Number of extensions: 172846
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 12
length of query: 370
length of database: 10,980,844
effective HSP length: 102
effective length of query: 268
effective length of database: 10,976,560
effective search space: 2941718080
effective search space used: 2941718080
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)