TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000047_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Drosophila melanogaster # Complete
         (398 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s...   300   2e-87
gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   5.6  
gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   5.6  

>gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13,
              whole genome shotgun sequence
          Length = 1052162

 Score =  300 bits (768), Expect(2) = 2e-87
 Identities = 154/290 (53%), Positives = 196/290 (67%), Gaps = 5/290 (1%)
 Frame = +2

Query: 110    FFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNMLMLLAVSTKMTEKERDVVIPLIMRG 169
              FF+P VDDPY+MGKIACANVLSDLY+ G+ +CDNMLMLLA ST MT + R+     +++G
Sbjct: 555905 FFFPNVDDPYLMGKIACANVLSDLYSFGIDECDNMLMLLAASTDMTPENRNWSTRGLIQG 556084

Query: 170    FKDSALEAGTTVTGGQSVVNPWCTIGGVASTICQPNEYIVPDNAVVGDVLVLTKPLGTQV 229
              F D    AGT V GGQ+V NPW  IGGVA+ I + +E I+P NAV GDVLVLTKPLGTQV
Sbjct: 556085 FNDHCNLAGTKVRGGQTVKNPWPLIGGVATAIIRKDEMIMPVNAVPGDVLVLTKPLGTQV 556264

Query: 230    AVNAHQWIDQPERWNRIKLVVSEEDVRKAYHRAMNSMARLNRVAARLMHKYNAHGATDIT 289
                N HQWI QPE+W +I  + + E+  + +  A  SMARLNR+ ARLM KY AH ATD+T
Sbjct: 556265 CANFHQWIRQPEKWAKIADIATVEEAVETFTYATQSMARLNRIGARLMRKYGAHAATDVT 556444

Query: 290    GFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLIC 349
              GFG+ GH+  LA  Q + V F IH LP+I  M  +     N + L +G SAETSGGLLI 
Sbjct: 556445 GFGIAGHSDNLAKSQLQPVVFEIHTLPIIEHMKKIDVHLNNNWNLCRGLSAETSGGLLIA 556624

Query: 350    LPREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTAR-----IIDKPRVIEV 394
              +P ++A  + K+IE+ E   AWIIG V   +K        +ID P ++E+
Sbjct: 556625 MPEDKAREFVKEIEEIEHQPAWIIGRVLASDKPVTENRSVVIDNPTILEI 556774



 Score = 42.0 bits (97), Expect(2) = 2e-87
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +3

Query: 39     RLTRFADLKGRGCKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRIGIGLDCSVIPLR 98
              RLT +  LKG GCK+PQ  L  L+  +                     GIG DC+++P +
Sbjct: 555672 RLTDYTKLKG*GCKIPQKELLSLLEGIGD-------------------GIGYDCAIVPTK 555794

Query: 99     HGGLCLVQTTD 109
                 + +V TTD
Sbjct: 555795 FPDIVMVTTTD 555827


>gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold6,
               whole genome shotgun sequence
          Length = 2018088

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -1

Query: 178     GTTVTGGQSVVNPWCTIGGVASTICQPNEYIVPDNAVVGDVLVLTKPLGT 227
               G+ +TG  S+ +P+C++    ++I   +   + DN V+  VL  T  + T
Sbjct: 1071123 GSDITGNGSISSPFCSLQHAINSISSGHSIYLLDNNVITPVLNTTYAVDT 1070974


>gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold4,
              whole genome shotgun sequence
          Length = 1229170

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 235    QWIDQPERWNRIKLVVSEEDVRKAYHRAMNSMARLNRVAARLM 277
              Q +++  +   I +  SE  +   YHR   S+ RLNR AA+ +
Sbjct: 875448 QEVNETSKHPAITIQSSERSISNRYHRVWCSLLRLNRRAAKYL 875576


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,393,443
Number of Sequences: 42
Number of extensions: 164485
Number of successful extensions: 533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 21
length of query: 398
length of database: 10,980,844
effective HSP length: 103
effective length of query: 295
effective length of database: 10,976,518
effective search space: 3238072810
effective search space used: 3238072810
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)