TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s...   245   2e-68
gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s...    32   1.0  

>gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13,
              whole genome shotgun sequence
          Length = 1052162

 Score =  245 bits (626), Expect(2) = 2e-68
 Identities = 123/284 (43%), Positives = 180/284 (63%)
 Frame = +2

Query: 82     FFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQIKLIVTAPTEFTEQEREVVVPMVMQG 141
              FF+P +DDP+++GKIA ANV+SD+++ G  E D + +++ A T+ T + R      ++QG
Sbjct: 555905 FFFPNVDDPYLMGKIACANVLSDLYSFGIDECDNMLMLLAASTDMTPENRNWSTRGLIQG 556084

Query: 142    FLEAAKACNAPVQIGSIAENPWCVIGGAASAVCHRSELIMPYNAQPGDALVLTKPLGTQL 201
              F +        V+ G   +NPW +IGG A+A+  + E+IMP NA PGD LVLTKPLGTQ+
Sbjct: 556085 FNDHCNLAGTKVRGGQTVKNPWPLIGGVATAIIRKDEMIMPVNAVPGDVLVLTKPLGTQV 556264

Query: 202    ATNAYIWMGEQQSDSWAQLRERFTVADIEQTYRIALESMSRLNKTGAELMKKYGAHAATD 261
                N + W+  +Q + WA++ +  TV +  +T+  A +SM+RLN+ GA LM+KYGAHAATD
Sbjct: 556265 CANFHQWI--RQPEKWAKIADIATVEEAVETFTYATQSMARLNRIGARLMRKYGAHAATD 556438

Query: 262    VTGFGLYGHAENLASHQTADVDFHLDTLPIIKNVREIAETLGRGAKLLAGKAVETSGGLL 321
              VTGFG+ GH++NLA  Q   V F + TLPII+++++I   L     L  G + ETSGGLL
Sbjct: 556439 VTGFGIAGHSDNLAKSQLQPVVFEIHTLPIIEHMKKIDVHLNNNWNLCRGLSAETSGGLL 556618

Query: 322    ICLPREAAAGFCEEYRRCTKHEAWIVGHVEKGARGVKMNPNLNI 365
              I +P + A  F +E        AWI+G V    + V  N ++ I
Sbjct: 556619 IAMPEDKAREFVKEIEEIEHQPAWIIGRVLASDKPVTENRSVVI 556750



 Score = 32.7 bits (73), Expect(2) = 2e-68
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 14     RLTKFSTLRGUGSKVPQDVLNRLLAGVYGEQLGDKDGKGPNKEEGVGIGLDSSVIALKH- 72
              RLT ++ L+G G K+PQ  L  LL G+                 G GIG D +++  K  
Sbjct: 555672 RLTDYTKLKG*GCKIPQKELLSLLEGI-----------------GDGIGYDCAIVPTKFP 555800

Query: 73     DLFLVQSVD 81
              D+ +V + D
Sbjct: 555801 DIVMVTTTD 555827


>gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3,
               whole genome shotgun sequence
          Length = 2290287

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 100     NVVSDVFAVGATEIDQIKLIVTAPTEFTEQEREVV 134
               NVV D F +G TEI    ++ T PT F E++ + V
Sbjct: 1247629 NVVDDRFTIGTTEILGFLIV*TQPTVFVERQTDSV 1247733


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,607,533
Number of Sequences: 42
Number of extensions: 123941
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 22
length of query: 369
length of database: 10,980,844
effective HSP length: 102
effective length of query: 267
effective length of database: 10,976,560
effective search space: 2930741520
effective search space used: 2930741520
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)