TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000055_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Anopheles gambiae # Complete
         (396 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s...   286   2e-82
gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic s...    32   1.1  
gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   5.6  
gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   7.3  

>gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13,
              whole genome shotgun sequence
          Length = 1052162

 Score =  286 bits (732), Expect(2) = 2e-82
 Identities = 149/290 (51%), Positives = 190/290 (65%), Gaps = 5/290 (1%)
 Frame = +2

Query: 108    FFYPIVDDPYMMGKIACANVLSDLYAMGVTEVDNMLMLLAVSTKMIEKERDVVIPLIMRG 167
              FF+P VDDPY+MGKIACANVLSDLY+ G+ E DNMLMLLA ST M  + R+     +++G
Sbjct: 555905 FFFPNVDDPYLMGKIACANVLSDLYSFGIDECDNMLMLLAASTDMTPENRNWSTRGLIQG 556084

Query: 168    FKDSALEAGTSVTGGHSVVNPWCTIGGVATTICQQNEFIVPDNAVVGDVLVLTKALGTQV 227
              F D    AGT V GG +V NPW  IGGVAT I +++E I+P NAV GDVLVLTK LGTQV
Sbjct: 556085 FNDHCNLAGTKVRGGQTVKNPWPLIGGVATAIIRKDEMIMPVNAVPGDVLVLTKPLGTQV 556264

Query: 228    AVNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNRVAARLMHKYNAHGATDVT 287
                N HQW+ Q E+W +I  + + E+  + +  A  SM+RLNR+ ARLM KY AH ATDVT
Sbjct: 556265 CANFHQWIRQPEKWAKIADIATVEEAVETFTYATQSMARLNRIGARLMRKYGAHAATDVT 556444

Query: 288    GFGLLGHAQTLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLIC 347
              GFG+ GH+  LA  Q   V F IH LP+I  M  +     N + L +G SAETSGGLLI 
Sbjct: 556445 GFGIAGHSDNLAKSQLQPVVFEIHTLPIIEHMKKIDVHLNNNWNLCRGLSAETSGGLLIA 556624

Query: 348    LPREQAAAYCKDIEKQEGCQAWIIGIVEKGSRTAR-----IIDKPRVIEV 392
              +P ++A  + K+IE+ E   AWIIG V    +        +ID P ++E+
Sbjct: 556625 MPEDKAREFVKEIEEIEHQPAWIIGRVLASDKPVTENRSVVIDNPTILEI 556774



 Score = 38.9 bits (89), Expect(2) = 2e-82
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +3

Query: 38     RLTRFADLKGRCCKVPKEVLEKLVSSLQQDYMQDPDQPFMPMSSPRIGIGLDCSVIPLRH 97
              RLT +  LKG  CK+P++ L  L+  +                    GIG DC+++P + 
Sbjct: 555672 RLTDYTKLKG*GCKIPQKELLSLLEGIGD------------------GIGYDCAIVPTKF 555797

Query: 98     GGLCMVQTTD 107
                + MV TTD
Sbjct: 555798 PDIVMVTTTD 555827


>gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold6,
               whole genome shotgun sequence
          Length = 2018088

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 176     GTSVTGGHSVVNPWCTIGGVATTICQQNEFIVPDNAVVGDVLVLTKALGT 225
               G+ +TG  S+ +P+C++     +I   +   + DN V+  VL  T A+ T
Sbjct: 1071123 GSDITGNGSISSPFCSLQHAINSISSGHSIYLLDNNVITPVLNTTYAVDT 1070974


>gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold12,
              whole genome shotgun sequence
          Length = 1032189

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
 Frame = -1

Query: 65     QQDYMQDPDQPFMPMSSPRIGIGLDCSVIPLRHGGLCMVQTTDFF-------YPIVDDPY 117
              QQ  M   DQP +  S PR   G + S  P+R G     Q  DF         PIV DP 
Sbjct: 850335 QQQQMDFDDQPPVTKSRPRAASGGNLSTPPIRGGN--EPQLIDFSEPAPVVKAPIVFDPI 850162

Query: 118    MMG 120
              M G
Sbjct: 850161 MDG 850153


>gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold4,
              whole genome shotgun sequence
          Length = 1229170

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 233    QWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNRVAARLM 275
              Q ++++ +   I +  SE  +   YHR   S+ RLNR AA+ +
Sbjct: 875448 QEVNETSKHPAITIQSSERSISNRYHRVWCSLLRLNRRAAKYL 875576


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,718,531
Number of Sequences: 42
Number of extensions: 164423
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 43
length of query: 396
length of database: 10,980,844
effective HSP length: 103
effective length of query: 293
effective length of database: 10,976,518
effective search space: 3216119774
effective search space used: 3216119774
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)