TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000053_1.0 # Protein # Selenoprotein K1 (SelK1) #
Anopheles gambiae # Complete
         (96 letters)

Database: N.gruberi/genome.fa 
           784 sequences; 40,964,085 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    25   8.5  

>gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_4, whole genome shotgun
              sequence
          Length = 712659

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 29     FNFLVMFFRTMLDF 42
              FNFLV FF  +LDF
Sbjct: 602388 FNFLVFFFLNLLDF 602347


  Database: N.gruberi/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 40,964,085
  Number of sequences in database:  784
  
Lambda     K      H
   0.332    0.146    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,041,157
Number of Sequences: 784
Number of extensions: 10360
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 20
length of query: 96
length of database: 13,654,695
effective HSP length: 71
effective length of query: 25
effective length of database: 13,599,031
effective search space: 339975775
effective search space used: 339975775
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (25.0 bits)