TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: N.gruberi/genome.fa 
           784 sequences; 40,964,085 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG738856.1| Naegleria gruberi genomic scaffold NAEGRscaffold_...    28   2.0  

>gb|GG738856.1| Naegleria gruberi genomic scaffold NAEGRscaffold_12, whole genome shotgun
              sequence
          Length = 602266

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 13     YEIFLRDRKLKYEKIRKRNALHNKFI 38
              YEIF R+ KLKY  I   +A HN+ +
Sbjct: 521234 YEIFTRNPKLKYCPIIMASAAHNETV 521157


  Database: N.gruberi/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 40,964,085
  Number of sequences in database:  784
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,259,336
Number of Sequences: 784
Number of extensions: 26100
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 24
length of query: 116
length of database: 13,654,695
effective HSP length: 87
effective length of query: 29
effective length of database: 13,586,487
effective search space: 394008123
effective search space used: 394008123
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)