TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Homo sapiens # Complete (392 letters) Database: N.gruberi/genome.fa 784 sequences; 40,964,085 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 116 4e-26 gb|GG738883.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 104 1e-22 gb|GG738857.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 31 1.8 gb|GG738861.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 30 4.0 gb|GG738909.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 8.8 >gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_8, whole genome shotgun sequence Length = 938756 Score = 116 bits (290), Expect = 4e-26 Identities = 98/372 (26%), Positives = 165/372 (44%), Gaps = 31/372 (8%) Frame = +1 Query: 19 RLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDT---CVIPL 75 +LT T G GCK+ L +L + + F P + +G +T C + Sbjct: 697966 KLTSTTHGLGCGCKIRAQTLSSILSKIPKQPFD----------PNVLVGTETSDDCGVYK 698115 Query: 76 RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR 135 L+L T D+ PIVD P G IACAN LSD+YAMG EC L ++ K Sbjct: 698116 LTSELALCATVDFFTPIVDSPKDFGAIACANALSDVYAMG-GECKVALNIVAFPVKRLSL 698292 Query: 136 ERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGD 195 + ++ LI+QG ++ A EAG ++ GG ++ + G + + P GD Sbjct: 698293 D---ILQLILQGAQEKASEAGVTIIGGHSIEDNEPKFGMCVSGLVHPERIWKNVGCRNGD 698463 Query: 196 VLVLTKPLGTQV-AVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGL 254 VL+LTKP+GT V A+ + L P K + + + E + + R+N ++ Sbjct: 698464 VLLLTKPIGTGVLTTAMKKGLIGPNDDCSKKCIEWMSTLNKSASEILRGLHRVNSSST-- 698637 Query: 255 MHTFNAHAATDITGFGILGHAQNL----------AKQQRNEVSFV--------------- 289 + HA TDITGFG++GH + + A+ + +V F+ Sbjct: 698638 --PYEIHACTDITGFGLMGHLREMITGDNQDNLYAQIESEKVPFMDKAYEMILSDIIPGG 698811 Query: 290 -IHNLPVLAKMAAVSKACGNMFGLMHGTC-PETSGGLLICLPREQAARFCAEIKSPKYGE 347 I+N+ + K+ +++ + + C +TSGGLL + ++ ++ K Sbjct: 698812 TINNMNFVQKITKFNESVSQIVRTL--LCDAQTSGGLLFSVSPHESEEIISDFKR----L 698973 Query: 348 GHQAWIIGIVEK 359 G W +G +++ Sbjct: 698974 GISIWTVGSIKQ 699009 >gb|GG738883.1| Naegleria gruberi genomic scaffold NAEGRscaffold_39, whole genome shotgun sequence Length = 371401 Score = 104 bits (260), Expect = 1e-22 Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 4/269 (1%) Frame = -2 Query: 19 RLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTC---VIPL 75 +LT+ G GCK+ +L +L+ L + E+ L +G TC + Sbjct: 75705 KLTQLASGLGCGCKINSRLLDSILQKLPKQ--PENNSVL--------VGNSTCDDAAVYK 75556 Query: 76 RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR 135 + +++V T D+ PIVD+PY G IACAN LSD+YAMG + L ++ ++ Sbjct: 75555 INDHVAIVSTIDFFAPIVDNPYDFGAIACANALSDVYAMG-GKPQTALSVVAFPSRTLPI 75379 Query: 136 ERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGD 195 E ++ I++G D A EAG ++ GG ++ + G + P++ GD Sbjct: 75378 E---ILQEILRGSIDKANEAGVAIVGGHSIDDEEPKFGMSVNGIIHPDKIFRNVGCEEGD 75208 Query: 196 VLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNR-TAAGL 254 +L LTK +GT V + + ++P + E A Q A+ +M LNR T+ L Sbjct: 75207 LLFLTKRIGTGVITSAMKLGNVP------------YESETA-QSAINSMKTLNRDTSYVL 75067 Query: 255 MHTFNAHAATDITGFGILGHAQNLAKQQR 283 + + TD+TGFG+LGH + + K R Sbjct: 75066 REMKSVSSCTDVTGFGLLGHLKEIMKGSR 74980 >gb|GG738857.1| Naegleria gruberi genomic scaffold NAEGRscaffold_13, whole genome shotgun sequence Length = 573072 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Frame = +3 Query: 141 MPLIIQGFKDAAEEAGTSV-----TGGQTV-LNPWIVLGGVATTVCQPNEFIMPDNAVPG 194 +PLI G + E+A + GG T + L G TVC +FI+P VPG Sbjct: 412773 VPLIDDGILEPGEQAKITNFVIKNEGGLTAPAGAEVSLTGDGFTVCNIPKFILPQPIVPG 412952 Query: 195 DVLVLT 200 V+ +T Sbjct: 412953 QVITIT 412970 >gb|GG738861.1| Naegleria gruberi genomic scaffold NAEGRscaffold_17, whole genome shotgun sequence Length = 507294 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%) Frame = -1 Query: 68 MDTCVIPLRHGG---LSLVQTTDYIYPIVDDPYMMGRIACANV----LSDLYAMGVT--E 118 +DTC+ LR+GG TT Y +D GR C ++ +Y + +T Sbjct: 1671 IDTCICQLRYGGKDCQDYQDTTCYGISSMDAKVCSGRGTCLDIDKCSCLSIYGVKITGDS 1492 Query: 119 CDNMLMLLGVSNKMTD 134 C+N L+ +G+ N + D Sbjct: 1491 CEN-LLCIGIYNGVED 1447 >gb|GG738909.1| Naegleria gruberi genomic scaffold NAEGRscaffold_65, whole genome shotgun sequence Length = 250472 Score = 28.9 bits (63), Expect = 8.8 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +3 Query: 316 TCPETSGGLLICLPREQAARFCA 338 TCP T L C P E + +FCA Sbjct: 217209 TCPITDENFLHCTPNESSGQFCA 217277 Database: N.gruberi/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 40,964,085 Number of sequences in database: 784 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,971,268 Number of Sequences: 784 Number of extensions: 221786 Number of successful extensions: 705 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 622 Number of HSP's gapped (non-prelim): 188 length of query: 392 length of database: 13,654,695 effective HSP length: 104 effective length of query: 288 effective length of database: 13,573,159 effective search space: 3909069792 effective search space used: 3909069792 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)