TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Drosophila melanogaster # Complete (370 letters) Database: N.gruberi/genome.fa 784 sequences; 40,964,085 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 94 3e-19 gb|GG738883.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 88 1e-17 gb|GG738851.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 37 0.039 gb|GG738876.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 32 1.3 gb|GG738912.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 6.3 gb|GG738934.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 8.2 gb|GG738909.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 8.2 gb|GG738880.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 8.2 >gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_8, whole genome shotgun sequence Length = 938756 Score = 93.6 bits (231), Expect = 3e-19 Identities = 105/373 (28%), Positives = 161/373 (43%), Gaps = 40/373 (10%) Frame = +1 Query: 2 FQPEKHGLEPDFQLTKFTTHTGUSCKIPQKVLEKYLRGTEIENKNND-GYLIGSGM--DC 58 F E G + +LT T G CKI + L L ++I + D L+G+ DC Sbjct: 697936 FSAENEGF--NVKLTSTTHGLGCGCKIRAQTLSSIL--SKIPKQPFDPNVLVGTETSDDC 698103 Query: 59 AVIPLKRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVSTS 118 V L + L TVDFF P+V+ P+ G IA AN LSDVYA+G + ++ Sbjct: 698104 GVYKLT--SELALCATVDFFTPIVDSPKDFGAIACANALSDVYAMGGECKVALNIV---- 698265 Query: 119 TSFSEKERDV-VIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEEI 177 +F K + ++ L+++G Q KA+ T + ++ N G + + E I Sbjct: 698266 -AFPVKRLSLDILQLILQGAQE--KASEAGVTIIGGHSIEDNE-PKFGMCVSGLVHPERI 698433 Query: 178 ILPSNAQPGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSECSDADIKETFEIAVKSM 237 + GDVL+LTKP+G + T K L+ D K ++ M Sbjct: 698434 WKNVGCRNGDVLLLTKPIGTGVL---------TTAMKKGLIGPNDDCSKK-----CIEWM 698571 Query: 238 TYLNKNAALLMH----------KYQAHCATDITGFGLLGHA----------NNLAQFQKE 277 + LNK+A+ ++ Y+ H TDITGFGL+GH N AQ + E Sbjct: 698572 STLNKSASEILRGLHRVNSSSTPYEIHACTDITGFGLMGHLREMITGDNQDNLYAQIESE 698751 Query: 278 KVLFQ----------------INKLPIIKNVLKFSTLVGQSTKFRSGRSVETSGGLLICL 321 KV F IN + ++ + KF+ V Q + +TSGGLL + Sbjct: 698752 KVPFMDKAYEMILSDIIPGGTINNMNFVQKITKFNESVSQIVRTLL-CDAQTSGGLLFSV 698928 Query: 322 PADAADKFCRDFE 334 +++ DF+ Sbjct: 698929 SPHESEEIISDFK 698967 >gb|GG738883.1| Naegleria gruberi genomic scaffold NAEGRscaffold_39, whole genome shotgun sequence Length = 371401 Score = 87.8 bits (216), Expect = 1e-17 Identities = 89/355 (25%), Positives = 154/355 (43%), Gaps = 33/355 (9%) Frame = -2 Query: 14 QLTKFTTHTGUSCKIPQKVLEKYLRGTEIENKNNDGYLIGSGM--DCAVIPLKRHKDYLL 71 +LT+ + G CKI ++L+ L+ + +NN L+G+ D AV + H + Sbjct: 75705 KLTQLASGLGCGCKINSRLLDSILQKLPKQPENNS-VLVGNSTCDDAAVYKINDH--VAI 75535 Query: 72 IQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVSTSTSFSEKERDVVIG 131 + T+DFF P+V++P G IA AN LSDVYA+G + ++ S R + I Sbjct: 75534 VSTIDFFAPIVDNPYDFGAIACANALSDVYAMGGKPQTALSVVAFPS-------RTLPIE 75376 Query: 132 LVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEEIILPSNAQPGDVLVL 191 ++ + + S+ ++ + G + ++I + GD+L L Sbjct: 75375 ILQEILRGSIDKANEAGVAIVGGHSIDDEEPKFGMSVNGIIHPDKIFRNVGCEEGDLLFL 75196 Query: 192 TKPLGGQMAMDAHLWQLNQTEKYKKLLSECSDADIKETFEIAVKSMTYLNKNAALLMHKY 251 TK +G + + K + E ET + A+ SM LN++ + ++ + Sbjct: 75195 TKRIGTGV--------ITSAMKLGNVPYE------SETAQSAINSMKTLNRDTSYVLREM 75058 Query: 252 QA-HCATDITGFGLLGHANNLAQFQKE------KVLFQINK----------LPIIKNVLK 294 ++ TD+TGFGLLGH + + +E ++ Q+N L +++ V+ Sbjct: 75057 KSVSSCTDVTGFGLLGHLKEIMKGSREICEENKDLVAQLNAKQIPLLDSSCLSLMRIVIP 74878 Query: 295 FSTL-----VGQSTKFRSGRSVE---------TSGGLLICLPADAADKFCRDFEE 335 T V Q +F S S E TSGGLL + D +K F+E Sbjct: 74877 GGTKTNLENVQQFVEFASTLSKEEQLILADAQTSGGLLFTISPDEEEKLVNSFKE 74713 >gb|GG738851.1| Naegleria gruberi genomic scaffold NAEGRscaffold_7, whole genome shotgun sequence Length = 693645 Score = 36.6 bits (83), Expect = 0.039 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Frame = -2 Query: 208 LNQTEKYKKLLSECSDADIKETFEIAVKSMTYLNKNAALLMHKYQAHCATD---ITGFGL 264 L E Y+K+L + + ET +I +K++T N N A L T+ I GF Sbjct: 419318 LASIEDYQKMLKQNLTVPVYETTQIQLKAIT--NNNGATLNWNQILPEITNRQQIIGFKA 419145 Query: 265 LGHANNLAQ--FQKEKVLFQINKLPIIKNVLKFSTLVGQSTKFRSGRSVETSGGLLIC 320 G+ Q KE VL +N+ IIK L + Q++ +S +++E +L+C Sbjct: 419144 WGYILYFLQKNISKENVLSNLNE--IIKPKLALRSEDSQASSSQSSKTMEIVNNMLVC 418977 >gb|GG738876.1| Naegleria gruberi genomic scaffold NAEGRscaffold_32, whole genome shotgun sequence Length = 396977 Score = 31.6 bits (70), Expect = 1.3 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +1 Query: 313 TSGGLLICLPADAA-DKFCRDFEEATNGEQKSFQI 346 +SG ++IC P ++ D+F RD E + EQK F I Sbjct: 279763 SSGTVVICFPTHSSLDEFVRDMVEVSKDEQKPFSI 279867 >gb|GG738912.1| Naegleria gruberi genomic scaffold NAEGRscaffold_68, whole genome shotgun sequence Length = 238573 Score = 29.3 bits (64), Expect = 6.3 Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Frame = +2 Query: 78 FYPMVNDPELLGRIALANVLSDVYAVGVT----QFDTVEMIVSTSTSFSEKERDVVIGLV 133 FY ++ +LL ++ L +L+ + T ++D + I S K+ ++ + L Sbjct: 105485 FYDYIDKGDLLKQLFLDTILTRILFTLRTSDSNEWDKIHSIFSLPKILKNKQLELDMNLP 105664 Query: 134 MKGFQNSLKANGYRNTPLIIRQLKINPWC 162 ++ + + ++ +NTP + K +PWC Sbjct: 105665 VR-YLPKIVSSDNKNTPKALSFSKRHPWC 105748 >gb|GG738934.1| Naegleria gruberi genomic scaffold NAEGRscaffold_90, whole genome shotgun sequence Length = 97622 Score = 28.9 bits (63), Expect = 8.2 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Frame = -2 Query: 187 DVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSECSDADIKETFEIAVKSMTYL-----N 241 D+L+ K Q +M+ HL LNQ K+ ++ + D + E A+K T L + Sbjct: 50137 DILISFKADDEQFSMEKHLEILNQLTKWCRVTQIVAKLDNVHSMEEALKFKTILESQESS 49958 Query: 242 KNAALLMHKYQ--AHC--ATDITGF 262 KN + ++ +HC T+I F Sbjct: 49957 KNGKFVYKLFENASHCLMETEIDDF 49883 >gb|GG738909.1| Naegleria gruberi genomic scaffold NAEGRscaffold_65, whole genome shotgun sequence Length = 250472 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +1 Query: 2 FQPEKH--GLEPDFQLTKFTTHTGUSCKIPQKVLEKYLRGTEIENKN 46 FQ +K L FQL +F H +CK+P+ + YL+ +EN+N Sbjct: 92860 FQQKKR**SLPKSFQLDQFPAHYQLTCKLPKDL--DYLQRH*LENQN 92994 >gb|GG738880.1| Naegleria gruberi genomic scaffold NAEGRscaffold_36, whole genome shotgun sequence Length = 416450 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -3 Query: 235 KSMTYLNKNAALLMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQI 283 K++ +L N+ LMHK+++H + LL + ++ K LFQ+ Sbjct: 305358 KTIAFLILNSPFLMHKHESHQQKKVKQVKLLSSTQ**YEMKRNKKLFQL 305212 Database: N.gruberi/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 40,964,085 Number of sequences in database: 784 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,083,619 Number of Sequences: 784 Number of extensions: 207419 Number of successful extensions: 942 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 785 Number of HSP's gapped (non-prelim): 372 length of query: 370 length of database: 13,654,695 effective HSP length: 103 effective length of query: 267 effective length of database: 13,573,943 effective search space: 3624242781 effective search space used: 3624242781 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)