TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Anopheles gambiae # Complete (369 letters) Database: N.gruberi/genome.fa 784 sequences; 40,964,085 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 100 2e-21 gb|GG738883.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 91 2e-18 gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 8.1 gb|GG738846.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 8.1 >gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_8, whole genome shotgun sequence Length = 938756 Score = 100 bits (249), Expect = 2e-21 Identities = 95/387 (24%), Positives = 160/387 (41%), Gaps = 36/387 (9%) Frame = +1 Query: 2 FKPESYGLSHDFRLTKFSTLRGUGSKVPQDVLNRLLAGVYGEQLGDKDGKGPNKEEGVGI 61 F E+ G + +LT + G G K+ L+ +L+ + K PN G Sbjct: 697936 FSAENEGFN--VKLTSTTHGLGCGCKIRAQTLSSILSKI------PKQPFDPNVLVGTET 698091 Query: 62 GLDSSVIALKHDLFLVQSVDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQIKLIVT 121 D V L +L L +VDFF P++D P G IA AN +SDV+A+G E IV Sbjct: 698092 SDDCGVYKLTSELALCATVDFFTPIVDSPKDFGAIACANALSDVYAMGG-ECKVALNIVA 698268 Query: 122 APTEFTEQEREVVVPMVMQGFLEAAKACNAPVQIGSIAENPWCVIGGAASAVCHRSELIM 181 P + + ++ +++QG E A + G E+ G S + H + Sbjct: 698269 FPVKRLSLD---ILQLILQGAQEKASEAGVTIIGGHSIEDNEPKFGMCVSGLVHPERIWK 698439 Query: 182 PYNAQPGDALVLTKPLGTQLATNAYIWMGEQQSDSWAQLRERFTVADIEQTYRIALESMS 241 + GD L+LTKP+GT + T A ++ + + + +E MS Sbjct: 698440 NVGCRNGDVLLLTKPIGTGVLTTA---------------MKKGLIGPNDDCSKKCIEWMS 698574 Query: 242 RLNKTGAELMK----------KYGAHAATDVTGFGLYGHAENLASHQTAD---------- 281 LNK+ +E+++ Y HA TD+TGFGL GH + + D Sbjct: 698575 TLNKSASEILRGLHRVNSSSTPYEIHACTDITGFGLMGHLREMITGDNQDNLYAQIESEK 698754 Query: 282 VDF----------------HLDTLPIIKNVREIAETLGRGAKLLAGKAVETSGGLLICLP 325 V F ++ + ++ + + E++ + + L A +TSGGLL + Sbjct: 698755 VPFMDKAYEMILSDIIPGGTINNMNFVQKITKFNESVSQIVRTLLCDA-QTSGGLLFSVS 698931 Query: 326 REAAAGFCEEYRRCTKHEAWIVGHVEK 352 + +++R W VG +++ Sbjct: 698932 PHESEEIISDFKR-LGISIWTVGSIKQ 699009 >gb|GG738883.1| Naegleria gruberi genomic scaffold NAEGRscaffold_39, whole genome shotgun sequence Length = 371401 Score = 90.9 bits (224), Expect = 2e-18 Identities = 88/380 (23%), Positives = 161/380 (42%), Gaps = 36/380 (9%) Frame = -2 Query: 14 RLTKFSTLRGUGSKVPQDVLNRLLAGVYGEQLGDKDGKGPNKEEGVGIGLDSSVIALKHD 73 +LT+ ++ G G K+ +L+ +L Q K + + G D++V + Sbjct: 75705 KLTQLASGLGCGCKINSRLLDSIL------QKLPKQPENNSVLVGNSTCDDAAVYKINDH 75544 Query: 74 LFLVQSVDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQIKLIV----TAPTEFTEQ 129 + +V ++DFF P++D+P+ G IA AN +SDV+A+G + ++ T P E ++ Sbjct: 75543 VAIVSTIDFFAPIVDNPYDFGAIACANALSDVYAMGGKPQTALSVVAFPSRTLPIEILQE 75364 Query: 130 EREVVVPMVMQGFLEAAKACNAPVQIGSIAENPWCVIGGAASAVCHRSELIMPYNAQPGD 189 +++G ++ A + G ++ G + + + H ++ + GD Sbjct: 75363 --------ILRGSIDKANEAGVAIVGGHSIDDEEPKFGMSVNGIIHPDKIFRNVGCEEGD 75208 Query: 190 ALVLTKPLGTQLATNAYIWMGEQQSDSWAQLRERFTVADIEQTYRIALESMSRLNK-TGA 248 L LTK +GT + T+A + +G +S +T + A+ SM LN+ T Sbjct: 75207 LLFLTKRIGTGVITSA-MKLGNVPYES--------------ETAQSAINSMKTLNRDTSY 75073 Query: 249 ELMKKYGAHAATDVTGFGLYGHAENLAS------HQTADVDFHLDTLPI----------- 291 L + + TDVTGFGL GH + + + D+ L+ I Sbjct: 75072 VLREMKSVSSCTDVTGFGLLGHLKEIMKGSREICEENKDLVAQLNAKQIPLLDSSCLSLM 74893 Query: 292 -----------IKNVR---EIAETLGRGAKLLAGKAVETSGGLLICLPREAAAGFCEEYR 337 ++NV+ E A TL + +L+ A +TSGGLL + + ++ Sbjct: 74892 RIVIPGGTKTNLENVQQFVEFASTLSKEEQLILADA-QTSGGLLFTISPDEEEKLVNSFK 74716 Query: 338 RCTKHEAWIVGHVEKGARGV 357 W +G + K V Sbjct: 74715 E-KNLNLWKIGEIVKKPNSV 74659 >gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_3, whole genome shotgun sequence Length = 941567 Score = 28.9 bits (63), Expect = 8.1 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -3 Query: 235 IALESMSRLNKTGAELMKKYGAHAATDVTGFGLYGHAENL 274 +A++S+S+ + +L+KKYG A GFG GH N+ Sbjct: 340755 VAIKSLSK--QEIKDLVKKYGPEAPKGSKGFGQEGHELNI 340642 >gb|GG738846.1| Naegleria gruberi genomic scaffold NAEGRscaffold_2, whole genome shotgun sequence Length = 1001995 Score = 28.9 bits (63), Expect = 8.1 Identities = 11/55 (20%), Positives = 29/55 (52%) Frame = -2 Query: 170 ASAVCHRSELIMPYNAQPGDALVLTKPLGTQLATNAYIWMGEQQSDSWAQLRERF 224 ++++C+ + +I+ YN G+ + +++ + + T W G SD+ + + F Sbjct: 497979 STSLCNNNHVILSYNGWSGNRVDISE*ISNRTITRVTCWEGNYWSDNASSTNQIF 497815 Database: N.gruberi/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 40,964,085 Number of sequences in database: 784 Lambda K H 0.319 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,725,250 Number of Sequences: 784 Number of extensions: 161101 Number of successful extensions: 545 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 503 Number of HSP's gapped (non-prelim): 99 length of query: 369 length of database: 13,654,695 effective HSP length: 103 effective length of query: 266 effective length of database: 13,573,943 effective search space: 3610668838 effective search space used: 3610668838 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.5 bits)