TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000055_1.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Anopheles gambiae # Complete (396 letters) Database: N.gruberi/genome.fa 784 sequences; 40,964,085 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 120 3e-27 gb|GG738883.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 107 2e-23 gb|GG738866.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 30 5.2 gb|GG738873.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 29 6.8 >gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_8, whole genome shotgun sequence Length = 938756 Score = 120 bits (300), Expect = 3e-27 Identities = 104/375 (27%), Positives = 164/375 (43%), Gaps = 36/375 (9%) Frame = +1 Query: 38 RLTRFADLKGRCCKVPKEVLEKLVSSLQQDYMQDPDQPFMPMSSPRIGIGLDCSVIPLRH 97 +LT G CK+ + L ++S + P QPF P DC V L Sbjct: 697966 KLTSTTHGLGCGCKIRAQTLSSILSKI-------PKQPFDPNVLVGTETSDDCGVYKLT- 698121 Query: 98 GGLCMVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTEVDNMLMLLAVSTKMIEKER 157 L + T DFF PIVD P G IACAN LSD+YAMG E L ++A K + + Sbjct: 698122 SELALCATVDFFTPIVDSPKDFGAIACANALSDVYAMG-GECKVALNIVAFPVKRLSLD- 698295 Query: 158 DVVIPLIMRGFKDSALEAGTSVTGGHSVVNPWCTIGGVATTICQQNEFIVPDNAVVGDVL 217 ++ LI++G ++ A EAG ++ GGHS+ + G + + GDVL Sbjct: 698296 --ILQLILQGAQEKASEAGVTIIGGHSIEDNEPKFGMCVSGLVHPERIWKNVGCRNGDVL 698469 Query: 218 VLTKALGTQVAVNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNRVAARLMH- 276 +LTK +GT V A + L+ +D K + ++ MS LN+ A+ ++ Sbjct: 698470 LLTKPIGTGVLTTA----------MKKGLIGPNDDCSK---KCIEWMSTLNKSASEILRG 698610 Query: 277 ---------KYNAHGATDVTGFGLLGHAQTL----------ASHQKNEVSFV-------- 309 Y H TD+TGFGL+GH + + A + +V F+ Sbjct: 698611 LHRVNSSSTPYEIHACTDITGFGLMGHLREMITGDNQDNLYAQIESEKVPFMDKAYEMIL 698790 Query: 310 --------IHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIE 361 I+N+ + K+ ++ + + L A+TSGGLL + ++ D Sbjct: 698791 SDIIPGGTINNMNFVQKITKFNESVSQIVRTLL-CDAQTSGGLLFSVSPHESEEIISDF- 698964 Query: 362 KQEGCQAWIIGIVEK 376 K+ G W +G +++ Sbjct: 698965 KRLGISIWTVGSIKQ 699009 >gb|GG738883.1| Naegleria gruberi genomic scaffold NAEGRscaffold_39, whole genome shotgun sequence Length = 371401 Score = 107 bits (267), Expect = 2e-23 Identities = 105/372 (28%), Positives = 166/372 (44%), Gaps = 33/372 (8%) Frame = -2 Query: 38 RLTRFADLKGRCCKVPKEVLEKLVSSLQQDYMQDPDQPFMPMSSPRIGIGL-DCSVIPLR 96 +LT+ A G CK+ +L+ ++ L P QP +S +G D + + Sbjct: 75705 KLTQLASGLGCGCKINSRLLDSILQKL-------PKQP--ENNSVLVGNSTCDDAAVYKI 75553 Query: 97 HGGLCMVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTEVDNMLMLLAVSTKMIEKE 156 + + +V T DFF PIVD+PY G IACAN LSD+YAMG + L ++A ++ + E Sbjct: 75552 NDHVAIVSTIDFFAPIVDNPYDFGAIACANALSDVYAMG-GKPQTALSVVAFPSRTLPIE 75376 Query: 157 RDVVIPLIMRGFKDSALEAGTSVTGGHSVVNPWCTIGGVATTICQQNEFIVPDNAVVGDV 216 ++ I+RG D A EAG ++ GGHS+ + G I ++ GD+ Sbjct: 75375 ---ILQEILRGSIDKANEAGVAIVGGHSIDDEEPKFGMSVNGIIHPDKIFRNVGCEEGDL 75205 Query: 217 LVLTKALGTQVAVNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNRVAARLMH 276 L LTK +GT V +A ++ V E + ++ A++SM LNR + ++ Sbjct: 75204 LFLTKRIGTGVITSA----------MKLGNVPYESETAQS---AINSMKTLNRDTSYVLR 75064 Query: 277 KY-NAHGATDVTGFGLLGH-------AQTLASHQKNEVS-------------------FV 309 + + TDVTGFGLLGH ++ + K+ V+ V Sbjct: 75063 EMKSVSSCTDVTGFGLLGHLKEIMKGSREICEENKDLVAQLNAKQIPLLDSSCLSLMRIV 74884 Query: 310 I-----HNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQE 364 I NL + + A QL+ A+TSGGLL + ++ K++ Sbjct: 74883 IPGGTKTNLENVQQFVEFASTLSKEEQLILA-DAQTSGGLLFTISPDEEEKLVNSF-KEK 74710 Query: 365 GCQAWIIGIVEK 376 W IG + K Sbjct: 74709 NLNLWKIGEIVK 74674 >gb|GG738866.1| Naegleria gruberi genomic scaffold NAEGRscaffold_22, whole genome shotgun sequence Length = 469335 Score = 29.6 bits (65), Expect = 5.2 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Frame = +2 Query: 192 IGGVATTICQQNEFIVPDNAVVGDVLVLTKALGTQVAVNAHQWLDQSE-RWNRIKLVVSE 250 IG + C Q++ N V D+ + + + ++ Q +++S+ R+ + VS+ Sbjct: 353777 IGLEISRACLQSKLY---NICVADIAIPQEG---SLPIDPFQNIEESQGRYLLLHCDVSK 353938 Query: 251 ED-VRKAYHRAMDSMSRLNRVAARLMHKYNAHGATDVTGFGL 291 ED V++ + +++ SRL+ V + +GA D+TG L Sbjct: 353939 EDHVQQVVSKTVETFSRLDAVINNAAISHPHYGAKDITGLSL 354064 >gb|GG738873.1| Naegleria gruberi genomic scaffold NAEGRscaffold_29, whole genome shotgun sequence Length = 461873 Score = 29.3 bits (64), Expect = 6.8 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Frame = -1 Query: 273 RLMHKYNAHGATDVTGFGLLGH--AQTLASH---QKNEVSFVIHNLPVIAKMAAVAKACG 327 R M + NA T+VT ++ A+TL SFV+ + VI ++ A+AK CG Sbjct: 55676 RKMKEVNALSTTNVTALAIIMESIAKTLLVII**TPTVHSFVMVTVLVIIRITALAKTCG 55497 Query: 328 NMFQLL 333 +F +L Sbjct: 55496 QIFTVL 55479 Database: N.gruberi/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 40,964,085 Number of sequences in database: 784 Lambda K H 0.322 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,315,545 Number of Sequences: 784 Number of extensions: 216689 Number of successful extensions: 763 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 675 Number of HSP's gapped (non-prelim): 205 length of query: 396 length of database: 13,654,695 effective HSP length: 104 effective length of query: 292 effective length of database: 13,573,159 effective search space: 3963362428 effective search space used: 3963362428 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 63 (28.9 bits)