TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma
cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun
sequence:[translate(1)]
         (89 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000390.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   2.1  
gb|ABWE01003701.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   3.6  
gb|ABWE01003610.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   6.2  
gb|ABWE01002025.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   6.2  
gb|ABWE01001789.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   6.2  
gb|ABWE01000673.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   6.2  
gb|ABWE01000500.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   6.2  
gb|ABWE01000411.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   6.2  
gb|ABWE01000359.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   6.2  
gb|ABWE01003653.1| Hyaloperonospora parasitica strain Emoy2 v-7....    26   8.1  
gb|ABWE01000800.1| Hyaloperonospora parasitica strain Emoy2 v-7....    26   8.1  

>gb|ABWE01000390.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont1.34, whole
           genome shotgun sequence
          Length = 45264

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 61  RSVGHAPRGPNIHGLPKGS 79
           RS+GH  +GP +HG P  S
Sbjct: 137 RSMGHCRQGPKVHGCPPDS 81


>gb|ABWE01003701.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont53.4, whole
            genome shotgun sequence
          Length = 1503

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 48   YRSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSLTGG 83
            +R TTR  P GGG+  G     PN    PK +L GG
Sbjct: 1371 FRPTTRKPPKGGGQKRGTTQPRPN----PKPNLWGG 1466


>gb|ABWE01003610.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont641.1, whole
            genome shotgun sequence
          Length = 1581

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 42   SQHVQEYRSTTRIVPFGGGRSVGHA 66
            S+H +  R T R V F GGR  GHA
Sbjct: 1505 SEHARGERHTGRHVFFQGGRRYGHA 1431


>gb|ABWE01002025.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont535.1, whole
            genome shotgun sequence
          Length = 6465

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 7    GRVVDSKPFSLVDFFLSILRLMWLFFA---TLVSSEPVSQ 43
            G V+DS PFS V + L  +   W  F+   T  SS P +Q
Sbjct: 5396 GIVIDSPPFSFVKYTLVAISCHW*IFSAKYTCFSSIPHNQ 5515


>gb|ABWE01001789.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont94.16, whole
            genome shotgun sequence
          Length = 9192

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -3

Query: 15   FSLVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVG 64
            F L  FF+ ++ L  LFF + + S+ V      YR+T+ I+ F    S+G
Sbjct: 8548 FCLRSFFIPLIMLFPLFFLS-IGSDIV---FVRYRATSSIIDFSDSLSLG 8411


>gb|ABWE01000673.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont235.1, whole
            genome shotgun sequence
          Length = 31997

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 42   SQHVQEYRSTTRIVPFGGGRSVGHA 66
            S+H +  R T R V F GGR  GHA
Sbjct: 4834 SEHARGERHTGRHVFFQGGRRYGHA 4908


>gb|ABWE01000500.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont84.12, whole
             genome shotgun sequence
          Length = 38872

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 58    GGGRSVGHAPRGPNIHGLPKGSLTGGC 84
             GGGRS GH  RG        G++ GGC
Sbjct: 21248 GGGRSDGHGSRG----SAAVGTVRGGC 21180


>gb|ABWE01000411.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont171.8, whole
             genome shotgun sequence
          Length = 44140

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
 Frame = -3

Query: 10    VDSKPFSLVDFFLSILRLMWLFFATLVSSE-PVSQHVQEYRSTTRIVPFGGGRSVGHAPR 68
             V S    +V FF       W     L   + PV +H    R      P+GGGR +     
Sbjct: 19202 VRSSLVGIVFFFSFYRTFSWCLLLFLADPDGPVDKHWHRNREVRNRYPWGGGRFIKPESG 19023

Query: 69    GPNIHGLPKGSLTG 82
              P   G P   + G
Sbjct: 19022 SPK-SGYPSLDIAG 18984


>gb|ABWE01000359.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont12.15, whole
             genome shotgun sequence
          Length = 47611

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
 Frame = -3

Query: 37    SSEPVSQHVQEYRSTT---RIVPFGGGRSVGHAPRGP-------NIHGLPKGSLTGGCA 85
             S++P+ QH           RIV  G  RS  HA  GP       N H L   +L+GG A
Sbjct: 15488 SNDPILQHCTT*TLPQ*GLRIVHPGQSRSAWHAATGPTERSASCNCHALNVAALSGGKA 15312


>gb|ABWE01003653.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont141.2, whole
           genome shotgun sequence
          Length = 1552

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 58  GGGRSVGHAP-RGPNIHGLPKGSLTGGC 84
           GG     HAP  GP  HG+ +   TGGC
Sbjct: 492 GGRLESVHAPYAGPAGHGMQRSDNTGGC 409


>gb|ABWE01000800.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont18.23, whole
             genome shotgun sequence
          Length = 27413

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 3     YVANGRVVDSKPFSLVDFFLSILRLMWLFFATLVSSEP 40
             Y++   + D   F  + F L I+R++W  +  L  +EP
Sbjct: 18077 YISFSALFDLYFFCFIWFLLFIIRIIWCIYIMLFVTEP 17964


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.323    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,479,482
Number of Sequences: 5422
Number of extensions: 98180
Number of successful extensions: 497
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of query: 89
length of database: 22,486,378
effective HSP length: 64
effective length of query: 25
effective length of database: 22,139,370
effective search space: 553484250
effective search space used: 553484250
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)