TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7....   129   9e-75
gb|ABWE01000961.1| Hyaloperonospora parasitica strain Emoy2 v-7....    32   2.0  

>gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont82.8, whole genome
             shotgun sequence
          Length = 27083

 Score =  129 bits (324), Expect(3) = 9e-75
 Identities = 78/194 (40%), Positives = 97/194 (50%), Gaps = 1/194 (0%)
 Frame = +2

Query: 38    FEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEAS 97
             F+P +LGL   + LT FS +KG GCK+PQ  LL  L  +   DV+P              
Sbjct: 12371 FDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPNDVKP-------------- 12508

Query: 98    QEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-GLSLVQTTDFFYPLVEDPYMMGRIACA 156
                        +P       GMDS V+ + HG GL LV TTDFF+P VEDPY+ G+IACA
Sbjct: 12509 ---------NETP-------GMDSSVVKISHGSGLYLVSTTDFFFPSVEDPYVQGQIACA 12640

Query: 157   NVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXXXXXXX 216
             NVLSD+YAMG+TE D                R+ VT  M++GF D               
Sbjct: 12641 NVLSDVYAMGVTEVDTMLMILGVCRDMTEKQRDVVTTEMIRGFNDLARQAQTNVTGGQTV 12820

Query: 217   XNPWIIIGGVATVV 230
              NPW I+GGVA  V
Sbjct: 12821 MNPWPIVGGVAMSV 12862



 Score =  109 bits (272), Expect(3) = 9e-75
 Identities = 58/118 (49%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
 Frame = +1

Query: 311   AHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGR-FGLLQGTSAE 369
             AH+ATD+TGFG+L H++N AK Q  +VSF +H LPII  M  V++  G  F LL G +AE
Sbjct: 13291 AHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDGFAAE 13470

Query: 370   TSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLP 427
             TSGGLL+CLP E A  F  E++     +   AWIVG V  G + A I+  P ++EV P
Sbjct: 13471 TSGGLLLCLPAENAEAFIKELREL---DEKPAWIVGRVIAGLKDACIVPNPTIVEVSP 13635



 Score = 83.6 bits (205), Expect(3) = 9e-75
 Identities = 38/73 (52%), Positives = 52/73 (71%)
 Frame = +3

Query: 235   EFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFN 294
             + I P++AVVGDV++LTKPLGTQVAVN  QW   PE+W +V  VV+  + ++A+Q A  +
Sbjct: 12972 QIIRPENAVVGDVIILTKPLGTQVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASES 13151

Query: 295   MATLNRTAAGLMH 307
             M  LN  AA +MH
Sbjct: 13152 MGRLNLNAAKMMH 13190


>gb|ABWE01000961.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont21.21, whole
             genome shotgun sequence
          Length = 22829

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 62    CKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGLPAGAGPSPT-FPAL 115
             C++P   +    + L R D+ PPLG  + G         G+P G  P P  FPAL
Sbjct: 13740 CELPLLRVWHADSRLPRVDILPPLGIPIPG*NPSGKPANGIPQGRMPDPC*FPAL 13576


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,623,860
Number of Sequences: 5422
Number of extensions: 392750
Number of successful extensions: 1605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 421
length of query: 448
length of database: 22,486,378
effective HSP length: 109
effective length of query: 339
effective length of database: 21,895,380
effective search space: 7422533820
effective search space used: 7422533820
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)