TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Homo sapiens # Complete
         (392 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7....   173   6e-90
gb|ABWE01000589.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   8.3  

>gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont82.8, whole genome
             shotgun sequence
          Length = 27083

 Score =  173 bits (438), Expect(3) = 6e-90
 Identities = 90/175 (51%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
 Frame = +2

Query: 6     SFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLG 65
             +F+P S  L++ F LT F+ LKG GCK+PQ  L   L+++  N           V P   
Sbjct: 12368 AFDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPND----------VKPNET 12517

Query: 66    IGMDTCVIPLRHG-GLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLM 124
              GMD+ V+ + HG GL LV TTD+ +P V+DPY+ G+IACANVLSD+YAMGVTE D MLM
Sbjct: 12518 PGMDSSVVKISHGSGLYLVSTTDFFFPSVEDPYVQGQIACANVLSDVYAMGVTEVDTMLM 12697

Query: 125   LLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTV 179
             +LGV   MT+++RD V   +I+GF D A +A T+VTGGQTV+NPW ++GGVA +V
Sbjct: 12698 ILGVCRDMTEKQRDVVTTEMIRGFNDLARQAQTNVTGGQTVMNPWPIVGGVAMSV 12862



 Score =  114 bits (284), Expect(3) = 6e-90
 Identities = 56/119 (47%), Positives = 77/119 (64%)
 Frame = +1

Query: 260   AHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPE 319
             AH+ATD+TGFG+L HA+N AK Q  +VSF +H LP++  M  V++  GN F L+ G   E
Sbjct: 13291 AHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDGFAAE 13470

Query: 320   TSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQ 378
             TSGGLL+CLP E A  F  E++     +   AWI+G V  G + A I+  P I+EV+P+
Sbjct: 13471 TSGGLLLCLPAENAEAFIKELREL---DEKPAWIVGRVIAGLKDACIVPNPTIVEVSPE 13638



 Score = 85.5 bits (210), Expect(3) = 6e-90
 Identities = 40/73 (54%), Positives = 52/73 (71%)
 Frame = +3

Query: 184   EFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMN 243
             + I P+NAV GDV++LTKPLGTQVAV V QW   PE+W ++  VVT  D ++A+Q A  +
Sbjct: 12972 QIIRPENAVVGDVIILTKPLGTQVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASES 13151

Query: 244   MARLNRTAAGLMH 256
             M RLN  AA +MH
Sbjct: 13152 MGRLNLNAAKMMH 13190


>gb|ABWE01000589.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont5.11, whole genome
             shotgun sequence
          Length = 35105

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -2

Query: 279   AKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETS------GGLLICLPRE 331
             AK+Q NEV F+I N    A+   V K  G+    MH    + S       G++I L RE
Sbjct: 13573 AKKQDNEVEFIIKNFIKRAQHLKVEKNIGSELKAMHVLLSKYSKHIDKVNGVIITLRRE 13397


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,061,642
Number of Sequences: 5422
Number of extensions: 426607
Number of successful extensions: 1468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 402
length of query: 392
length of database: 22,486,378
effective HSP length: 107
effective length of query: 285
effective length of database: 21,906,224
effective search space: 6243273840
effective search space used: 6243273840
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)