TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7....   120   3e-62
gb|ABWE01000103.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   3.4  
gb|ABWE01001004.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   5.8  

>gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont82.8, whole genome
             shotgun sequence
          Length = 27083

 Score =  120 bits (302), Expect(3) = 3e-62
 Identities = 71/171 (41%), Positives = 97/171 (56%), Gaps = 1/171 (0%)
 Frame = +2

Query: 2     FQPEKHGLEPDFQLTKFTTHTGUSCKIPQKVLEKYLRGTEIEN-KNNDGYLIGSGMDCAV 60
             F P   GLE DF LT F+   G  CK+PQ  L  YL      + K N+      GMD +V
Sbjct: 12371 FDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPNDVKPNET----PGMDSSV 12538

Query: 61    IPLKRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVSTSTS 120
             + +       L+ T DFF+P V DP + G+IA ANVLSDVYA+GVT+ DT+ MI+     
Sbjct: 12539 VKISHGSGLYLVSTTDFFFPSVEDPYVQGQIACANVLSDVYAMGVTEVDTMLMILGVCRD 12718

Query: 121   FSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSV 171
              +EK+RDVV   +++GF +  +      T +   Q  +NPW I+GG+A SV
Sbjct: 12719 MTEKQRDVVTTEMIRGFNDLAR---QAQTNVTGGQTVMNPWPIVGGVAMSV 12862



 Score = 99.4 bits (246), Expect(3) = 3e-62
 Identities = 53/117 (45%), Positives = 77/117 (65%)
 Frame = +1

Query: 253   AHCATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLVGQSTKFRSGRSVE 312
             AH ATD+TGFGLL HA N A+ Q E V F+++ LPIIKN++K + ++G S K   G + E
Sbjct: 13291 AHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDGFAAE 13470

Query: 313   TSGGLLICLPADAADKFCRDFEEATNGEQKSFQIGHVTAANESDAVLCEDVEFIEVS 369
             TSGGLL+CLPA+ A+ F ++  E    E+ ++ +G V A  + DA +  +   +EVS
Sbjct: 13471 TSGGLLLCLPAENAEAFIKELREL--DEKPAWIVGRVIAGLK-DACIVPNPTIVEVS 13632



 Score = 59.7 bits (143), Expect(3) = 3e-62
 Identities = 31/75 (41%), Positives = 49/75 (65%)
 Frame = +3

Query: 176   EIILPSNAQPGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSECSDADIKETFEIAVK 235
             +II P NA  GDV++LTKPLG Q+A++   W+  + E+++++    +  D    F++A +
Sbjct: 12972 QIIRPENAVVGDVIILTKPLGTQVAVNVFQWK-KKPEQWQRVNQVVTPHDADVAFQMASE 13148

Query: 236   SMTYLNKNAALLMHK 250
             SM  LN NAA +MHK
Sbjct: 13149 SMGRLNLNAAKMMHK 13193


>gb|ABWE01000103.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont53.8, whole genome
             shotgun sequence
          Length = 81940

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -2

Query: 205   LWQLNQTEKYKKLLSECSDADIKETF 230
             LW+LN + K+K+LLSE   A++ +TF
Sbjct: 33162 LWRLNSSWKHKRLLSEAGFANLFKTF 33085


>gb|ABWE01001004.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont70.8, whole genome
             shotgun sequence
          Length = 21826

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 284   NKLPIIKNVLKFSTLVGQSTKFRSGRSVETSGGLLICL 321
             N L  +K+   + T+V     FRSGR +E+  G  IC+
Sbjct: 18618 NALHYVKHPNNYGTIVRTLRLFRSGRDIESRRGYSICI 18505


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,104,809
Number of Sequences: 5422
Number of extensions: 331360
Number of successful extensions: 1213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 403
length of query: 370
length of database: 22,486,378
effective HSP length: 107
effective length of query: 263
effective length of database: 21,906,224
effective search space: 5761336912
effective search space used: 5761336912
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)