TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000047_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Drosophila melanogaster # Complete
         (398 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7....   166   3e-61

>gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont82.8, whole genome
             shotgun sequence
          Length = 27083

 Score =  166 bits (421), Expect(2) = 3e-61
 Identities = 88/176 (50%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
 Frame = +2

Query: 27    FDPTAHDLDASFRLTRFADLKGRGCKVPQDVLSKLVSALQQDYSAQDQEPQFLNVAIPRI 86
             FDP +  L+  F LT F+ LKG GCK+PQ  L   +  +  +    ++ P          
Sbjct: 12371 FDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPNDVKPNETP---------- 12520

Query: 87    GIGLDCSVIPLRHG-GLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNML 145
               G+D SV+ + HG GL LV TTDFF+P V+DPY+ G+IACANVLSD+YAMGVT+ D ML
Sbjct: 12521 --GMDSSVVKISHGSGLYLVSTTDFFFPSVEDPYVQGQIACANVLSDVYAMGVTEVDTML 12694

Query: 146   MLLAVSTKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWCTIGGVASTI 201
             M+L V   MTEK+RDVV   ++RGF D A +A T VTGGQ+V+NPW  +GGVA ++
Sbjct: 12695 MILGVCRDMTEKQRDVVTTEMIRGFNDLARQAQTNVTGGQTVMNPWPIVGGVAMSV 12862



 Score =  122 bits (307), Expect = 7e-28
 Identities = 71/173 (41%), Positives = 93/173 (53%), Gaps = 14/173 (8%)
 Frame = +1

Query: 240   PERWNR--------------IKLVVSEEDVRKAYHRAMNSMARLNRVAARLMHKYNAHGA 285
             P RW R              I+LV+ E D        M      + V     H   AH A
Sbjct: 13129 PSRWRRNLWVDSI*TQPR*CIRLVLEEADTLNDSRVCMQVYRY*HFVVPCF*H--GAHSA 13302

Query: 286   TDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGG 345
             TD+TGFGLL HA+  A  Q +DVSF +H LP+I  M  V +  GN F+LL G +AETSGG
Sbjct: 13303 TDVTGFGLLAHARNQAKSQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDGFAAETSGG 13482

Query: 346   LLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPRVIEVPAKD 398
             LL+CLP E A A+ K++ + +   AWI+G V  G K A I+  P ++EV  +D
Sbjct: 13483 LLLCLPAENAEAFIKELRELDEKPAWIVGRVIAGLKDACIVPNPTIVEVSPED 13641



 Score = 89.0 bits (219), Expect(2) = 3e-61
 Identities = 42/74 (56%), Positives = 53/74 (71%)
 Frame = +3

Query: 206   EYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLVVSEEDVRKAYHRAMNS 265
             + I P+NAVVGDV++LTKPLGTQVAVN  QW  +PE+W R+  VV+  D   A+  A  S
Sbjct: 12972 QIIRPENAVVGDVIILTKPLGTQVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASES 13151

Query: 266   MARLNRVAARLMHK 279
             M RLN  AA++MHK
Sbjct: 13152 MGRLNLNAAKMMHK 13193


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,998,250
Number of Sequences: 5422
Number of extensions: 438656
Number of successful extensions: 1850
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 1542
Number of HSP's gapped (non-prelim): 519
length of query: 398
length of database: 22,486,378
effective HSP length: 107
effective length of query: 291
effective length of database: 21,906,224
effective search space: 6374711184
effective search space used: 6374711184
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)